Shared pedigree relationships and transmission of unreduced gametes in cultivated banana

TitleShared pedigree relationships and transmission of unreduced gametes in cultivated banana
Publication TypeJournal Article
Year of Publication2023
AuthorsMartin G, Baurens F-C, Labadie K, Hervouet C, Salmon F, Marius F, Paulo-de-la-Reberdiere N, Van den Houwe I, Aury J-M, D’Hont A, Yahiaoui N
JournalAnnals of Botany
Date Published06
ISSN0305-7364
Abstract

Cultivated bananas resulted from inter-(sub-)specific hybridizations involving Musa species and subspecies (M. acuminata subspecies, M. schizocarpa, M. balbisiana) and the subsequent selection, centuries ago, of hybrids with parthenocarpic, seedless fruits. Cultivars have low fertility and are vegetatively propagated, forming groups of somaclones. Relatively few of them, mainly triploids, are grown on a large scale and characterization of their parental relationships may be useful for breeding strategies. Here, we investigate parental relationships and gamete-type contributions among diploid and polyploid banana cultivars.We used SNP genotyping data from whole genome sequencing of 178 banana individuals including 111 cultivars, 55 wild bananas and 12 synthetic F1 hybrids. We analysed the proportion of SNP sites in accordance with direct parentage with a global statistic and along chromosomes for selected individuals.We characterised parentage relationships for seven diploid, eleven triploid and one tetraploid cultivars. Results showed that both diploid and triploid cultivars could have contributed gametes to other banana cultivars. Diploids may have contributed 1x or 2x gametes and triploids, 1x to 3x gametes. The Mchare diploid cultivars group nowadays only found in East Africa, was found as parent of 2 diploid and 8 triploid cultivars. In five of its identified triploid offspring, corresponding to main export or locally popular dessert bananas, Mchare contributed a 2x gamete with full genome restitution without recombination. Analyses of remaining haplotypes in these Mchare offspring suggested ancestral pedigree relationships between different interspecific banana cultivars.Current cultivated banana resulted from different pathways of formation, with implication of recombined or un-recombined unreduced gametes produced by diploid or triploid cultivars. Identification of dessert banana’s parents and the type of their contributed gametes should support the design of breeding strategies.

URLhttps://doi.org/10.1093/aob/mcad065
DOI10.1093/aob/mcad065
Showing 40 of 130 accessions
Accession Name Pictures Accession number Species / Group SubSpecies / SubGroup Origin Collection Available for distribution
Malaysian Blood ITC0568 AA Unknown Unknown ITC
Sena ITC1013 AA Unknown Papua New Guinea ITC
Veinte Cohol ITC1031 AA Unknown Unknown ITC
Agutay ITC1028 acuminata Unknown Unknown ITC
Pisang Cici Alas ITC0415 acuminata Unknown Indonesia ITC
Pahang ITC0609 acuminata subsp. malaccensis Malaysia ITC
Musa peekelii ssp. peekelii ITC0917 peekelii subsp. peekelii Papua New Guinea ITC
Wh-o-gu ITC0078 AAA Unknown Papua New Guinea ITC
Higa ITC0464 acuminata subsp. banksii Indonesia ITC
Racadag ITC0434 AA Unknown Philippines ITC
Pisang Serun 404 ITC1348 acuminata subsp. malaccensis Malaysia ITC
Pisang Serun 400 ITC1349 acuminata subsp. malaccensis Malaysia ITC
Tomolo ITC1187 AA Unknown Papua New Guinea ITC
Manameg Red ITC0996 AA Unknown Papua New Guinea ITC
Musa acuminata ssp. banksii ITC0897 acuminata subsp. banksii Papua New Guinea ITC
Katual no.2 ITC0786 AA Unknown Papua New Guinea ITC
Sihir ITC0810 AA Unknown Papua New Guinea ITC
Merik ITC0946 AAA Unknown Papua New Guinea ITC
Tonton Kepa ITC0822 AS Unknown Papua New Guinea ITC
Musa acuminata ssp. banksii ITC0885 acuminata subsp. banksii Papua New Guinea ITC
Spiral ITC1206 AA Unknown Papua New Guinea ITC
Vudu Beo ITC1211 AA Unknown Papua New Guinea ITC
Gorop ITC0778 AA Unknown Papua New Guinea ITC
Aivip ITC0785 AA Unknown Papua New Guinea ITC
Musa lolodensis ITC0956 lolodensis Unknown Papua New Guinea ITC
Papat ITC1245 AA Unknown Papua New Guinea ITC
Grande Naine PT-BA-00104 AAA subgr. Cavendish Unknown CIRAD
Microcarpa PT-BA-00204 acuminata subsp. microcarpa Unknown CIRAD
Bornéo PT-BA-00040 acuminata subsp. microcarpa Unknown CIRAD
Pa Rayong PT-BA-00263 acuminata subsp. siamea Unknown CIRAD
Galeo ITC0259 AA Unknown Papua New Guinea ITC
Pisang Madu PT-BA-00304 AA Unknown Malaysia CIRAD
Kirun PT-BA-00154 AA Unknown Unknown CIRAD
Manang PT-BA-00190 AA Unknown Unknown CIRAD
Paka PT-BA-00270 AA Unknown Unknown CIRAD
Pisang Berlin PT-BA-00284 AA Unknown Unknown CIRAD
Pisang Ceylan PT-BA-00286 AA Unknown Unknown CIRAD
Pisang Lilin PT-BA-00303 AA Unknown Unknown CIRAD
Niyarma Yik PT-BA-00242 AA Unknown Unknown CIRAD
Pisang Ambon PT-BA-00279 AAA subgr. Ambon Unknown CIRAD

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