Shared pedigree relationships and transmission of unreduced gametes in cultivated banana

TitleShared pedigree relationships and transmission of unreduced gametes in cultivated banana
Publication TypeJournal Article
Year of Publication2023
AuthorsMartin G, Baurens F-C, Labadie K, Hervouet C, Salmon F, Marius F, Paulo-de-la-Reberdiere N, Van den Houwe I, Aury J-M, D’Hont A, Yahiaoui N
JournalAnnals of Botany
Date Published06
ISSN0305-7364
Abstract

Cultivated bananas resulted from inter-(sub-)specific hybridizations involving Musa species and subspecies (M. acuminata subspecies, M. schizocarpa, M. balbisiana) and the subsequent selection, centuries ago, of hybrids with parthenocarpic, seedless fruits. Cultivars have low fertility and are vegetatively propagated, forming groups of somaclones. Relatively few of them, mainly triploids, are grown on a large scale and characterization of their parental relationships may be useful for breeding strategies. Here, we investigate parental relationships and gamete-type contributions among diploid and polyploid banana cultivars.We used SNP genotyping data from whole genome sequencing of 178 banana individuals including 111 cultivars, 55 wild bananas and 12 synthetic F1 hybrids. We analysed the proportion of SNP sites in accordance with direct parentage with a global statistic and along chromosomes for selected individuals.We characterised parentage relationships for seven diploid, eleven triploid and one tetraploid cultivars. Results showed that both diploid and triploid cultivars could have contributed gametes to other banana cultivars. Diploids may have contributed 1x or 2x gametes and triploids, 1x to 3x gametes. The Mchare diploid cultivars group nowadays only found in East Africa, was found as parent of 2 diploid and 8 triploid cultivars. In five of its identified triploid offspring, corresponding to main export or locally popular dessert bananas, Mchare contributed a 2x gamete with full genome restitution without recombination. Analyses of remaining haplotypes in these Mchare offspring suggested ancestral pedigree relationships between different interspecific banana cultivars.Current cultivated banana resulted from different pathways of formation, with implication of recombined or un-recombined unreduced gametes produced by diploid or triploid cultivars. Identification of dessert banana’s parents and the type of their contributed gametes should support the design of breeding strategies.

URLhttps://doi.org/10.1093/aob/mcad065
DOI10.1093/aob/mcad065
Showing 40 of 130 accessions
Accession Name Pictures Accession number Species / Group SubSpecies / SubGroup Origin Collection Available for distribution
Guyod
PT-BA-00112 AA Unknown Philippines CIRAD
Gwanhour
PT-BA-00443 AA Unknown Unknown CIRAD
Heva
PT-BA-00114 AA Unknown Unknown CIRAD
SF 265
PT-BA-00367 AA Unknown Unknown CIRAD
Sinwobogi
PT-BA-00371 AA Unknown Papua New Guinea CIRAD
Kumburgh (ou Kunburg)
PT-BA-00160 AA Unknown Unknown CIRAD
Wompa
PT-BA-00423 AA Unknown Papua New Guinea CIRAD
Dibit
PT-BA-00067 AA Unknown Papua New Guinea CIRAD
Bebek
PT-BA-00027 AA Unknown Papua New Guinea CIRAD
Koja
PT-BA-00157 AAA Unknown Comoros CIRAD
Pisang Papan
PT-BA-00309 AAA Unknown Unknown CIRAD
Palang
PT-BA-00271 AAA Unknown Unknown CIRAD
Mnalouki
PT-BA-00207 AAB Unknown Comoros CIRAD
Karoina
PT-BA-00142 AAT Unknown Papua New Guinea CIRAD
Musa acuminata sp.sumatrana
ITC1701 acuminata Unknown Indonesia ITC
Hom (Thong Mokho)
PT-BA-00122 AAA subgr. Ambon Unknown CIRAD
balbisiana (CMR)
PT-BA-00018 balbisiana Unknown Unknown CIRAD
Lal Velchi
PT-BA-00172 balbisiana Unknown Unknown CIRAD
Butuhan
PT-BA-00049 balbisiana Unknown Unknown CIRAD
Hawain 2
PT-BA-00113 acuminata subsp. banksii Papua New Guinea CIRAD
Waigu
PT-BA-00412 acuminata subsp. banksii Unknown CIRAD
Poteau Géant
PT-BA-00343 ABB subgr. Bluggoe Guadeloupe CIRAD
Pisang Prentel
PT-BA-00311 acuminata subsp. burmannica Unknown CIRAD
Kole
ITC1704 Unknown Unknown Unknown ITC
Aata
PT-BA-00005 Fe'i Unknown Unknown CIRAD
Aiori
PT-BA-00009 Fe'i Unknown French Polynesia CIRAD
Asupina
PT-BA-00014 Fe'i Unknown Unknown CIRAD
Luba
PT-BA-00179 AAB subgr. Iholena Papua New Guinea CIRAD
Kunnan
PT-BA-00163 AB subgr. Kunnan India CIRAD
Laknao
PT-BA-00171 AAB subgr. Laknau Philippines CIRAD
Hung Si
PT-BA-00124 maclayi subsp. maclayi Papua New Guinea CIRAD
Popoulou CMR
PT-BA-00341 AAB subgr. Maia Maoli/Popoulu Unknown CIRAD
Maia Maoli
PT-BA-00181 AAB subgr. Maia Maoli/Popoulu Unknown CIRAD
Pisang Kra
ITC1345 acuminata subsp. malaccensis Malaysia ITC
Pisang Karok 391
ITC1346 acuminata subsp. malaccensis Malaysia ITC
Sélangor
PT-BA-00363 acuminata subsp. malaccensis Unknown CIRAD
Cici (Brésil)
PT-BA-00059 acuminata subsp. malaccensis Unknown CIRAD
EN 13
PT-BA-00078 acuminata subsp. microcarpa Unknown CIRAD
Pisang Cici Alas
PT-BA-00287 acuminata subsp. microcarpa Unknown CIRAD
AAs-IDN 113
PT-BA-00004 acuminata subsp. microcarpa der. Unknown CIRAD

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