Shared pedigree relationships and transmission of unreduced gametes in cultivated banana

TitleShared pedigree relationships and transmission of unreduced gametes in cultivated banana
Publication TypeJournal Article
Year of Publication2023
AuthorsMartin G, Baurens F-C, Labadie K, Hervouet C, Salmon F, Marius F, Paulo-de-la-Reberdiere N, Van den Houwe I, Aury J-M, D’Hont A, Yahiaoui N
JournalAnnals of Botany
Date Published06
ISSN0305-7364
Abstract

Cultivated bananas resulted from inter-(sub-)specific hybridizations involving Musa species and subspecies (M. acuminata subspecies, M. schizocarpa, M. balbisiana) and the subsequent selection, centuries ago, of hybrids with parthenocarpic, seedless fruits. Cultivars have low fertility and are vegetatively propagated, forming groups of somaclones. Relatively few of them, mainly triploids, are grown on a large scale and characterization of their parental relationships may be useful for breeding strategies. Here, we investigate parental relationships and gamete-type contributions among diploid and polyploid banana cultivars.We used SNP genotyping data from whole genome sequencing of 178 banana individuals including 111 cultivars, 55 wild bananas and 12 synthetic F1 hybrids. We analysed the proportion of SNP sites in accordance with direct parentage with a global statistic and along chromosomes for selected individuals.We characterised parentage relationships for seven diploid, eleven triploid and one tetraploid cultivars. Results showed that both diploid and triploid cultivars could have contributed gametes to other banana cultivars. Diploids may have contributed 1x or 2x gametes and triploids, 1x to 3x gametes. The Mchare diploid cultivars group nowadays only found in East Africa, was found as parent of 2 diploid and 8 triploid cultivars. In five of its identified triploid offspring, corresponding to main export or locally popular dessert bananas, Mchare contributed a 2x gamete with full genome restitution without recombination. Analyses of remaining haplotypes in these Mchare offspring suggested ancestral pedigree relationships between different interspecific banana cultivars.Current cultivated banana resulted from different pathways of formation, with implication of recombined or un-recombined unreduced gametes produced by diploid or triploid cultivars. Identification of dessert banana’s parents and the type of their contributed gametes should support the design of breeding strategies.

URLhttps://doi.org/10.1093/aob/mcad065
DOI10.1093/aob/mcad065
Showing 13 of 130 accessions
Accession Name Pictures Accession number Species / Group SubSpecies / SubGroup Origin Collection Available for distribution
Lady finger
PT-BA-00168 AAB subgr. Nadan Unknown CIRAD
Pisang Rajah
PT-BA-00314 AAB subgr. Nendra Padaththi Unknown CIRAD
Ice Cream
PT-BA-00126 ABB subgr. Ney Mannan Unknown CIRAD
Hom (Sakhon Nakhon)
PT-BA-00121 AAA subgr. Orotava Unknown CIRAD
Namwa Khom
PT-BA-00234 ABB subgr. Pisang Awak Unknown CIRAD
Pisang Jari Buaya (BS 312)
PT-BA-00293 AA subgr. Pisang Jari Buaya Malaysia CIRAD
Figue Rose Naine
PT-BA-00089 AAA subgr. Red Guadeloupe CIRAD
Schizocarpa
ITC0926 schizocarpa Unknown Papua New Guinea ITC
Pa (Songkhla)
PT-BA-00262 acuminata subsp. siamea Unknown CIRAD
Kingala 1
PT-BA-00153 AAB subgr. Silk Unknown CIRAD
Red Yade
PT-BA-00355 AAB subgr. Plantain Unknown CIRAD
Pisang Mas
PT-BA-00305 AA subgr. Sucrier Unknown CIRAD
AAs-IDN 113
PT-BA-00004 acuminata subsp. microcarpa der. Unknown CIRAD

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