Musa Genotyping Center Results (diploids)

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Description of the dataset: 

The Musa Genotyping Centre was established at the Laboratory of Molecular Cytogenetics and Cytometry of the Institute of Experimental Botany (IEB), Olomouc, Czech Republic in 2009. A standardized platform for molecular characterization has been developed for Musa germplasm (Christelová et al. 2011). The system is based on 19 microsatellite loci that are scored after the PCR with fluorescently labeled primers and capillary electrophoretic separation with internal standard (GeneScanTM-500 LIZ size standard, Applied Biosystems). The PCR products are multiplexed prior to the separation and loaded onto the automatic 96-capillary ABI 3730xl DNA Analyzer. Electrophoretic separation and signal detection is carried out with default module settings.
Here we provide an Unrooted NJ tree with 221 diploids accessions using 19 SSR markers.
Source of data: Musa Genotyping Centre
Source of Tree: Institute of Experimental Botany (IEB)

See all accessions used in this study

Showing 40 of 219 accessions
Accession Name Pictures Accession numbersort descending Species / Group SubSpecies / SubGroup Origin Collection Available for distribution
Musa velutina ITC0011 velutina subsp. velutina Nigeria ITC
Pisang Tongat
ITC0063 AA Unknown Unknown ITC
Type 2 ITC0069 acuminata Unknown Unknown ITC
Tavoy ITC0072 acuminata subsp. burmannica Unknown ITC
ITC0074 acuminata subsp. malaccensis Unknown ITC
Tjau Lagada ITC0090 AA Unknown Unknown ITC
Long Tavoy ITC0093 acuminata subsp. burmannica Unknown ITC
Balbisiana (10852) ITC0094 balbisiana Unknown Unknown ITC
Safet Velchi ITC0245 AB subgr. Ney Poovan India ITC
Cameroun ITC0246 balbisiana Unknown Unknown ITC
Honduras ITC0247 balbisiana Unknown Honduras ITC
ITC0248 balbisiana Unknown Unknown ITC
Calcutta 4 ITC0249 acuminata subsp. burmannicoides Myanmar ITC
Malaccensis ITC0250 acuminata subsp. malaccensis Unknown ITC
Borneo ITC0253 acuminata subsp. microcarpa Unknown ITC
Pisang Madu ITC0258 AA Unknown Unknown ITC
Galeo ITC0259 AA Unknown Unknown ITC
Sowmuk ITC0266 AA Unknown Unknown ITC
NBA 14
ITC0267 AA Unknown Unknown ITC
Niyarma Yik ITC0269 AA Unknown Unknown ITC
Akondro Mainty ITC0281 AA Unknown Unknown ITC
Long Tavoy ITC0283 acuminata subsp. burmannica Unknown ITC
Musa coccinea ITC0287 coccinea subsp. coccinea Unknown ITC
Djum Tau
ITC0292 AA Unknown Indonesia ITC
Pitu ITC0294 AA Unknown Unknown ITC
ITC0299 AA Unknown Philippines ITC
Morong Princesa ITC0310 AA subgr. Pisang Jari Buaya Philippines ITC
Pisang Jari Buaya ITC0312 AA subgr. Pisang Jari Buaya Malaysia ITC
Saing Todloh ITC0316 AA subgr. Pisang Jari Buaya Philippines ITC
Not Named
ITC0318 AA subgr. Pisang Jari Buaya Indonesia ITC
Musa ornata ITC0370 ornata subsp. ornata Unknown ITC
Uwati ITC0373 AA Unknown Papua New Guinea ITC
Higa ITC0378 acuminata Unknown Indonesia ITC
Truncata ITC0393 acuminata subsp. truncata Unknown ITC
Lidi ITC0395 AA Unknown Unknown ITC
Pa (Musore) no.3 ITC0406 acuminata Unknown Thailand ITC
Pa (Songkhla) ITC0408 acuminata Unknown Unknown ITC
Pisang Cici Alas ITC0415 acuminata Unknown Indonesia ITC
Higa ITC0428 acuminata subsp. banksii Unknown ITC
Racadag ITC0434 AA Unknown Philippines ITC