Musa Genotyping Center Results (diploids)

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Description of the dataset: 

The Musa Genotyping Centre was established at the Laboratory of Molecular Cytogenetics and Cytometry of the Institute of Experimental Botany (IEB), Olomouc, Czech Republic in 2009. A standardized platform for molecular characterization has been developed for Musa germplasm (Christelová et al. 2011). The system is based on 19 microsatellite loci that are scored after the PCR with fluorescently labeled primers and capillary electrophoretic separation with internal standard (GeneScanTM-500 LIZ size standard, Applied Biosystems). The PCR products are multiplexed prior to the separation and loaded onto the automatic 96-capillary ABI 3730xl DNA Analyzer. Electrophoretic separation and signal detection is carried out with default module settings.
Here we provide an Unrooted NJ tree with 221 diploids accessions using 19 SSR markers.
Source of data: Musa Genotyping Centre
Source of Tree: Institute of Experimental Botany (IEB)

See all accessions used in this study

Showing 40 of 219 accessions
Accession Name Pictures Accession number Species / Group SubSpecies / SubGroup Origin Collection Available for distribution
Safet Velchi ITC0245 AB subgr. Ney Poovan India ITC
Malaysian Blood ITC0568 AA Unknown Unknown ITC
Selangor 2 ITC0629 acuminata Unknown Unknown ITC
Kluai Lep Mu Nang ITC0533 AA Unknown Unknown ITC
Pisang Sapon ITC0679 AA Unknown Indonesia ITC
Pa (Musore) no.2 ITC0668 acuminata Unknown Thailand ITC
Sena ITC1013 AA Unknown Papua New Guinea ITC
Uyam ITC0819 AA Unknown Papua New Guinea ITC
Khai Thong Ruang ITC0662 AAA subgr. Ibota Thailand ITC
Musa ornata ITC0370 ornata subsp. ornata Unknown ITC
Yalumia ITC1220 AA Unknown Papua New Guinea ITC
Pisang Madu ITC0258 AA Unknown Unknown ITC
Pisang Bangkahulu ITC0689 AA Unknown Indonesia ITC
Bata Bata ITC0974 AA Unknown Unknown ITC
Type 2 ITC0069 acuminata Unknown Unknown ITC
Balbisiana ITC0545 balbisiana Unknown Unknown ITC
Calcutta 4 ITC0249 acuminata subsp. burmannicoides Myanmar ITC
Truncata ITC0393 acuminata subsp. truncata Unknown ITC
Pisang Lilin ITC1121 AA Unknown Unknown ITC
Sowmuk ITC0266 AA Unknown Unknown ITC
Niyarma Yik ITC0269 AA Unknown Unknown ITC
Pitu ITC0294 AA Unknown Unknown ITC
Tuu Gia ITC0610 AA Unknown Unknown ITC
Agutay ITC1028 acuminata Unknown Unknown ITC
Pa (Musore) no.3 ITC0406 acuminata Unknown Thailand ITC
Pisang Cici Alas ITC0415 acuminata Unknown Indonesia ITC
Waigu ITC0465 acuminata subsp. banksii Unknown ITC
Long Tavoy ITC0093 acuminata subsp. burmannica Unknown ITC
Musa maclayi type Hung Si ITC0614 maclayi subsp. maclayi Papua New Guinea ITC
Pahang ITC0609 acuminata subsp. malaccensis Malaysia ITC
Musa textilis ITC1072 textilis subsp. textilis Unknown ITC
Zebrina ITC1177 acuminata subsp. zebrina Unknown ITC
Maia Oa ITC0728 acuminata subsp. zebrina Unknown ITC
Lidi ITC0395 AA Unknown Unknown ITC
Pisang Berlin ITC0611 AA Unknown Unknown ITC
Musa lutea ITC1515 Unknown Unknown Unknown ITC
Mshare Mrerembo ITC1579 AA subgr. Mshare Tanzania ITC
Pisang Jari Buaya ITC0312 AA subgr. Pisang Jari Buaya Malaysia ITC
Musa mannii ITC1411 Unknown Unknown Unknown ITC
Tudlo Tumbaga ITC1231 AA Unknown Unknown ITC