Musa Genotyping Center Results (triploids)

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Marker type: 
SSR
Description of the dataset: 

The Musa Genotyping Centre was established at the Laboratory of Molecular Cytogenetics and Cytometry of the Institute of Experimental Botany (IEB), Olomouc, Czech Republic in 2009. A standardized platform for molecular characterization has been developed for Musa germplasm (Christelová et al. 2011). The system is based on 19 microsatellite loci that are scored after the PCR with fluorescently labeled primers and capillary electrophoretic separation with internal standard (GeneScanTM-500 LIZ size standard, Applied Biosystems). The PCR products are multiplexed prior to the separation and loaded onto the automatic 96-capillary ABI 3730xl DNA Analyzer. Electrophoretic separation and signal detection is carried out with default module settings.

Here we provide an Unrooted NJ tree with 171 triploids accession using 19 SSR markers genotyped as described in Christelová et al. 2011.
Source of data: Musa Genotyping Centre
Source of Tree: Institute of Experimental Botany (IEB)

See all accessions used in this study

Showing 40 of 170 accessions
Accession Namesort descending Pictures Accession number Species / Group SubSpecies / SubGroup Origin Collection Available for distribution
2390-2
ITC0553 AAAA Unknown Jamaica ITC
3 Vert
ITC1127 AAB subgr. Plantain Unknown ITC
Adili
ITC1494 AAB subgr. Plantain Congo (Kinshasa) ITC
Afati Black
ITC1506 AAB subgr. Plantain Congo (Kinshasa) ITC
Afati 'Wine red'
ITC1501 AAB subgr. Plantain Congo (Kinshasa) ITC
Agbagba ITC0111 AAB subgr. Plantain Nigeria ITC
Akpakpak ITC0217 AAB subgr. Plantain Nigeria ITC
Akpasi
ITC1490 AAB subgr. Plantain Congo (Kinshasa) ITC
Aleke
ITC1538 AAB subgr. Plantain Congo (Kinshasa) ITC
Amagaba
ITC1509 AAB subgr. Plantain Congo (Kinshasa) ITC
Amakake
ITC1484 AAB subgr. Plantain Congo (Kinshasa) ITC
Americani ITC0557 AAA Unknown Unknown ITC
Amuku
ITC1488 AAB subgr. Plantain Congo (Kinshasa) ITC
Apoka
ITC1510 AAB subgr. Plantain Congo (Kinshasa) ITC
Apoka Magbuge
ITC1493 AAB subgr. Plantain Congo (Kinshasa) ITC
Asamiensa
ITC0007 AAB subgr. Plantain Ghana ITC
Bagatow
ITC1232 AAB Unknown Papua New Guinea ITC
Balbisiana tetraploide
ITC0454 BBB Unknown Honduras ITC
Balonkawe ITC0473 ABB Unknown Philippines ITC
Batard
ITC1126 AAB subgr. Plantain Unknown ITC
Big Ebanga ITC1129 AAB subgr. Plantain Unknown ITC
Bira ITC0945 AAB Unknown Papua New Guinea ITC
Blue Java ITC0361 ABB subgr. Ney Mannan Unknown ITC
Bokpeta
ITC1496 AAB subgr. Plantain Congo (Kinshasa) ITC
Bolomaise
ITC1504 AAB subgr. Plantain Congo (Kinshasa) ITC
Bom
ITC1438 AA Unknown Vietnam ITC
Boofo
ITC1487 AAB subgr. Plantain Congo (Kinshasa) ITC
Boosa
ITC1505 AAB subgr. Plantain Congo (Kinshasa) ITC
Bosakaraka
ITC1495 AAB subgr. Plantain Congo (Kinshasa) ITC
Bungaoisan
ITC0033 AAB subgr. Plantain Indonesia ITC
Cachaco ITC0643 ABB subgr. Bluggoe Unknown ITC
CIRAD-MU 916
ITC1584 Unknown Unknown Guadeloupe ITC
CIRAD-MU 920
ITC1585 Unknown Unknown Guadeloupe ITC
Cocos ITC0724 AAA subgr. Gros Michel Unknown ITC
Daluyao ITC0034 AAB subgr. Plantain Philippines ITC
Diploid Basilan
ITC0438 AAA Unknown Philippines ITC
Dole ITC0767 ABB subgr. Bluggoe Unknown ITC
Dwarf Cavendish ITC0002 AAA subgr. Cavendish Unknown ITC
Eba Oboikpa
ITC0514 AAB subgr. Plantain Unknown ITC
Egbe-o-Mabese
ITC1489 AAB subgr. Plantain Congo (Kinshasa) ITC

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