DArT whole genome profiling of ITC accessions

Publication title or Reference: 

Marker type: 
DArT
Description of the dataset: 

This study was composed of 94 wild accessions and of 481 cultivated accessions. Darwin 5.0 (Perrier and Jacquemoud-Collet, 2006; Perrier et al., 2003) was used to calculate genetic distances between pairs of the 535 accessions (out of 575 of the published study). To do so, both modalities (0,1) were given equal weight using the Sokal and Michener (1958) dissimilarity index as the proportion of unmatching markers. we built a neighbor-joining (NJ) tree (Saitou and Nei, 1987) with the diploid accessions composed of A and B genomes only . With regard to the evolutionary history of cultivated bananas, we then built a second NJ tree with all the accessions composed of A and B genomes under the constraint of the diploid tree topology.

See all accessions used in this study

Showing 40 of 531 accessions
Accession Name Pictures Accession number Species / Group SubSpecies / SubGroup Origin Collection Available for distribution
Fai Palagi ITC1059 AAA subgr. Cavendish Samoa ITC
Chinese Cavendish ITC0547 AAA subgr. Cavendish Unknown ITC
New Guinea Cavendish ITC0569 AAA subgr. Cavendish Unknown ITC
Rukumamb ITC0831 AAB subgr. Iholena Papua New Guinea ITC
Nou ITC1236 AAB subgr. Maia Maoli/Popoulu Unknown ITC
Red Dacca ITC0575 AAA subgr. Red Unknown ITC
Akpakpak ITC0217 AAB subgr. Plantain Unknown ITC
Plantain no.2 ITC0513 AAB subgr. Plantain Unknown ITC
Obubit Ntanga green mutant ITC0519 AAB subgr. Plantain Unknown ITC
Mossmum ITC1003 AA Unknown Papua New Guinea ITC
Meinje ITC1015 AA Unknown Papua New Guinea ITC
Jaruda ITC1017 AA Unknown Papua New Guinea ITC
Taoaya ITC1023 AA Unknown Papua New Guinea ITC
Mah ITC1212 AA Unknown Papua New Guinea ITC
Hogolo ITC1217 AA Unknown Papua New Guinea ITC
Mapua ITC1244 AA Unknown Papua New Guinea ITC
Papat ITC1245 AA Unknown Papua New Guinea ITC
Colatina Ouro ITC0260 AA Unknown Unknown ITC
Bie Yeng ITC0279 AA Unknown Unknown ITC
Akondro Mainty ITC0281 AA Unknown Unknown ITC
Jawaka ITC0374 AA Unknown Papua New Guinea ITC
Padri ITC0460 AA Unknown Indonesia ITC
Vudu Papua ITC0590 AA Unknown Papua New Guinea ITC
Beo ITC0592 AA Unknown Papua New Guinea ITC
Waimara ITC0600 AA Unknown Papua New Guinea ITC
Hung Tu ITC0601 AA Unknown Papua New Guinea ITC
Navaradam ITC0770 AA Unknown Papua New Guinea ITC
Lalalur ITC0771 AA Unknown Papua New Guinea ITC
Tangamor ITC0779 AA Unknown Papua New Guinea ITC
Kirkirnan ITC0796 AA Unknown Papua New Guinea ITC
Palakaur ITC0799 AA Unknown Papua New Guinea ITC
Yalim ITC0837 AA Unknown Papua New Guinea ITC
Porapora ITC0868 AA Unknown Papua New Guinea ITC
Himone ITC0886 AA Unknown Papua New Guinea ITC
Grupnai ITC0887 AA Unknown Papua New Guinea ITC
Pai ka ITC0892 AA Unknown Papua New Guinea ITC
Tamat ITC0899 AA Unknown Papua New Guinea ITC
Bavaya ITC0903 AA Unknown Papua New Guinea ITC
Suruh ITC0908 AA Unknown Papua New Guinea ITC
Dimaemamosi ITC0920 AA Unknown Papua New Guinea ITC

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