TSV file format explained

TSV file format

* mean that these field follow MCPD rules

Field Name

Field explanation

Example

Uniquename

Managed by MGIS team

 

accenumb *

Accession number

ITC1904

accename *

Accession name

Nesuri

conservation_status

Status of the conservation, three (3 different values:

  • active
  • eliminated
  • lost

active

storage *

Type of germplasm storage, values are:

10 Seed collection
11 Short term
12 Medium term
13 Long term
20 Field collection
30 In vitro collection
40 Cryopreserved collection
50 DNA collection
99 Other

30 in vitro collection

sampstat *

Biological status of accession, values are:

100 wild
110 natural
120 semi-natural or wild
130 semi-natural or sown
200 weedy
300 traditional cultivar or landrace
400 breeding or research material
410 breeder's line
411 synthetic population
412 hybrid
413 founder stock or base population
414 inbred line (parent of hybrid cultivar
415 segregating population
416 clonal selection
420 genetic stock
421 mutant
422 cytogenic stocks
423 Other genetic stocks
500 advanced or improved cultivar
600 GMO
999 other biological status of accession

300 traditional cultivar or landrace

genus *

Genus

Musa

taxonomy_classification

Last known level taxon (e.g. AAB or balbisiana or Sucrier...

AA

acqdate *

Acquisition date [YYYYMMDD]

where YYYY is the year, MM is the month and DD is the day. Missing data (MM or DD should be indicated with hyphens or ‘00’ [double zero].

20171211

origcty *

Country of origin,

3-letter ISO 3166-1 code of the country in which the sample was originally collected

PNG

leaf_count

Specific to ITC collection for managing the availability of leaf sample for distribution

 

smta

Specific to ITC collection for managing the different Additional conditions attached to improved material

 

exchange_availability

Specific to ITC collection for MOOS management

 

ploidy_date

Ploidy result date of sample [YYYYMMDD]

where YYYY is the year, MM is the month and DD is the day. Missing data (MM or DD should be indicated with hyphens or ‘00’ [double zero].

 

ploidy_centre

Ploidy centre

 

ploidy

Ploidy result

 

parent1

Female parent when breeding material

Use the following format: INSTCODE:ACCENUMB

 

parent2

Male parent when breeding material

Use the following format: INSTCODE:ACCENUMB

 

cryo_duplicate

Specific to ITC for knowing which accessions are duplicate and where

 

othernumb *

Other identifiers associated with the accession,

Any other identifiers known to exist in other collections for this accession. Use the following format: INSTCODE:ACCENUMB;INSTCODE:identifier;… INSTCODE and identifier are separated by a colon without space. Pairs of INSTCODE and identifier are separated by a semicolon without space. When the institute is not known, the identifier should be preceded by a colon. e.g. BEL084:ITC1200

PNG004:AROB034

collsite *

Location of collecting site,

Location information below the country level that describes where the accession was collected, preferable in English. This might include the distance in kilometers and direction from the nearest town, village or map grid reference point, (e.g. 7 km south of Curitiba in the state of Parana.

 

collsrc *

Collecting/acquisition source, values are:

10 wild habitat
11 forest or woodland
12 shrubland
13 grassland
14 desert or tundra
15 aquatic habitat
20 farm or cultivated habitat
21 field
22 orchard
23 backyard, kitchen, or home garden (urban, peri-urban or rural
24 fallow land
25 pasture
26 farm store
27 threshing floor
28 park
30 market or shop
40 institute, experimental station, research organization, genebank
50 seed company
60 weedy, disturbed or ruderal habitat
61 roadside
62 field margin
99 other collecting or acquisition source

 

colldate *

Collecting date of sample [YYYYMMDD]

where YYYY is the year, MM is the month and DD is the day. Missing data (MM or DD should be indicated with hyphens or ‘00’ [double zero].

20161026

declatitude *

Latitude of collecting site (Decimal degrees format

Latitude expressed in decimal degrees. Positive values are North of the Equator; negative values are South of the Equator (e.g. -44.6975.

-6.2883

declongitude *

Longitude of collecting site (Decimal degrees format

Longitude expressed in decimal degrees. Positive values are East of the Greenwich Meridian; negative values are West of the Greenwich Meridian (e.g. +120.9123.

155.7157

elevation

Elevation of collecting site expressed in meters (ASL

36


* mean that these field follow MCPD rules

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