Musa Genotyping Center Results (diploids)

Publication title or Reference: 

Marker type: 
SSR
Description of the dataset: 

The Musa Genotyping Centre was established at the Laboratory of Molecular Cytogenetics and Cytometry of the Institute of Experimental Botany (IEB), Olomouc, Czech Republic in 2009. A standardized platform for molecular characterization has been developed for Musa germplasm (Christelová et al. 2011). The system is based on 19 microsatellite loci that are scored after the PCR with fluorescently labeled primers and capillary electrophoretic separation with internal standard (GeneScanTM-500 LIZ size standard, Applied Biosystems). The PCR products are multiplexed prior to the separation and loaded onto the automatic 96-capillary ABI 3730xl DNA Analyzer. Electrophoretic separation and signal detection is carried out with default module settings.
Here we provide an Unrooted NJ tree with 221 diploids accessions using 19 SSR markers.
Source of data: Musa Genotyping Centre
Source of Tree: Institute of Experimental Botany (IEB)

See all accessions used in this study

Showing 40 of 219 accessions
Accession Name Pictures Accession number Species / Group SubSpecies / SubGroup Origin Collection Available for distribution
Lidi ITC0395 AA Unknown Unknown ITC
Pisang Berlin ITC0611 AA Unknown Indonesia ITC
Musa lutea ITC1515 Unknown Unknown Unknown ITC
Mshare Mrerembo ITC1579 AA subgr. Mshare Tanzania ITC
Pisang Jari Buaya ITC0312 AA subgr. Pisang Jari Buaya Malaysia ITC
Musa mannii ITC1411 Unknown Unknown Unknown ITC
Tudlo Tumbaga ITC1231 AA Unknown Unknown ITC
Uwati ITC0373 AA Unknown Papua New Guinea ITC
Racadag ITC0434 AA Unknown Philippines ITC
Tjau Lagada ITC0090 AA Unknown Indonesia ITC
Higa ITC0378 acuminata Unknown Indonesia ITC
Musa beccarii ITC1070 beccarii subsp. beccarii Unknown ITC
Tavoy ITC0072 acuminata subsp. burmannica Unknown ITC
Pisang Serun 404 ITC1348 acuminata subsp. malaccensis Malaysia ITC
Pisang Serun 400 ITC1349 acuminata subsp. malaccensis Malaysia ITC
Khae (Phrae) ITC0660 acuminata subsp. siamea Thailand ITC
Zebrina (G.F.) ITC0966 acuminata subsp. zebrina Unknown ITC
Morong Princesa ITC1150 AA Unknown Unknown ITC
Akondro Mainty ITC0281 AA Unknown Unknown ITC
AAcv Rose ITC0712 AA Unknown Indonesia ITC
Higa ITC0428 acuminata subsp. banksii Papua New Guinea ITC
Malaccensis ITC0250 acuminata subsp. malaccensis Malaysia ITC
Diploide EMBRAPA 204 ITC1192 AA Unknown Brazil ITC
Pu-te La-Bum ITC0446 AA Unknown Malaysia ITC
Pisang Pipit ITC0685 AA Unknown Indonesia ITC
Pa (Songkhla) ITC0408 acuminata Unknown Thailand ITC
Banksii ITC0623 acuminata subsp. banksii Papua New Guinea ITC
Paliama ITC0766 acuminata subsp. banksii Papua New Guinea ITC
Pisang Kermian ITC0437 AA Unknown Malaysia ITC
Pa (Rayong) ITC0672 acuminata subsp. siamea Thailand ITC
Binaktong ITC1181 AA Unknown Unknown ITC
Te'engi ITC0951 AA Unknown Papua New Guinea ITC
Balbisiana (10852) ITC0094 balbisiana Unknown Unknown ITC
Morong Princesa ITC0310 AA subgr. Pisang Jari Buaya Philippines ITC
Musa textilis ITC0539 textilis subsp. textilis Unknown ITC
Tomolo ITC1187 AA Unknown Papua New Guinea ITC
Pisang Mas ITC0653 AA subgr. Sucrier Unknown ITC
Mambee Thu ITC0612 AA Unknown Papua New Guinea ITC
Tani ITC1120 balbisiana Unknown Thailand ITC
Cameroun ITC0246 balbisiana Unknown Cameroon ITC

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