Musa Genotyping Center Results (triploids)

Publication title or Reference: 

Marker type: 
SSR
Description of the dataset: 

The Musa Genotyping Centre was established at the Laboratory of Molecular Cytogenetics and Cytometry of the Institute of Experimental Botany (IEB), Olomouc, Czech Republic in 2009. A standardized platform for molecular characterization has been developed for Musa germplasm (Christelová et al. 2011). The system is based on 19 microsatellite loci that are scored after the PCR with fluorescently labeled primers and capillary electrophoretic separation with internal standard (GeneScanTM-500 LIZ size standard, Applied Biosystems). The PCR products are multiplexed prior to the separation and loaded onto the automatic 96-capillary ABI 3730xl DNA Analyzer. Electrophoretic separation and signal detection is carried out with default module settings.

Here we provide an Unrooted NJ tree with 171 triploids accession using 19 SSR markers genotyped as described in Christelová et al. 2011.
Source of data: Musa Genotyping Centre
Source of Tree: Institute of Experimental Botany (IEB)

See all accessions used in this study

Showing 40 of 170 accessions
Accession Name Pictures Accession number Species / Group SubSpecies / SubGroup Origin Collection Available for distribution
Libanga Dark Green
ITC1498 AAB subgr. Plantain Congo (Kinshasa) ITC
Apoka
ITC1510 AAB subgr. Plantain Congo (Kinshasa) ITC
Amakake
ITC1484 AAB subgr. Plantain Congo (Kinshasa) ITC
Boofo
ITC1487 AAB subgr. Plantain Congo (Kinshasa) ITC
Amuku
ITC1488 AAB subgr. Plantain Congo (Kinshasa) ITC
Akpasi
ITC1490 AAB subgr. Plantain Congo (Kinshasa) ITC
Adili
ITC1494 AAB subgr. Plantain Congo (Kinshasa) ITC
Bosakaraka
ITC1495 AAB subgr. Plantain Congo (Kinshasa) ITC
Nganganga
ITC1497 AAB subgr. Plantain Congo (Kinshasa) ITC
Nguku
ITC1499 AAB subgr. Plantain Congo (Kinshasa) ITC
Afati 'Wine red'
ITC1501 AAB subgr. Plantain Congo (Kinshasa) ITC
Magoma I
ITC1502 AAB subgr. Plantain Congo (Kinshasa) ITC
Otiti
ITC1503 AAB subgr. Plantain Congo (Kinshasa) ITC
Bolomaise
ITC1504 AAB subgr. Plantain Congo (Kinshasa) ITC
Boosa
ITC1505 AAB subgr. Plantain Congo (Kinshasa) ITC
Afati Black
ITC1506 AAB subgr. Plantain Congo (Kinshasa) ITC
Magoma II
ITC1507 AAB subgr. Plantain Congo (Kinshasa) ITC
Litete
ITC1508 AAB subgr. Plantain Congo (Kinshasa) ITC
Amagaba
ITC1509 AAB subgr. Plantain Congo (Kinshasa) ITC
Yumba Black
ITC1512 AAB subgr. Plantain Congo (Kinshasa) ITC
Inekeleikumi
ITC1513 AAB subgr. Plantain Congo (Kinshasa) ITC
Kambolokoso
ITC1537 AAB subgr. Plantain Congo (Kinshasa) ITC
Aleke
ITC1538 AAB subgr. Plantain Congo (Kinshasa) ITC
Yumba
ITC1565 AAB subgr. Plantain Congo (Kinshasa) ITC
Losakala
ITC1566 AAB subgr. Plantain Congo (Kinshasa) ITC
Libanga Liboelabokoi
ITC1567 AAB subgr. Plantain Congo (Kinshasa) ITC
Libanga Liboelabokoi
ITC1581 AAB subgr. Plantain Congo (Kinshasa) ITC
Yelola
ITC1582 AAB subgr. Plantain Congo (Kinshasa) ITC
Yumba
ITC1583 AAB subgr. Plantain Congo (Kinshasa) ITC
Maqueño
ITC0631 AAB subgr. Plantain Unknown ITC
Mzuzu
ITC0144 AAB subgr. Plantain Unknown ITC
Ikpolo Black
ITC1486 AAB subgr. Plantain Congo (Kinshasa) ITC
Lokusu
ITC1491 AAB subgr. Plantain Congo (Kinshasa) ITC
Tala Lola
ITC1500 AAB subgr. Plantain Congo (Kinshasa) ITC
Ikpolo Red
ITC1536 AAB subgr. Plantain Congo (Kinshasa) ITC
One Hand Planty
ITC0184 AAB subgr. Plantain Unknown ITC
Kisukari kirefu
ITC1563 Unknown Unknown Tanzania ITC
Musa L. indet (cultivar)
ITC1530 Unknown Unknown Malaysia ITC
Musa yunnanensis
ITC1573 Unknown Unknown Unknown ITC
CIRAD-MU 916
ITC1584 Unknown Unknown Guadeloupe ITC

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