Musa Genotyping Center Results (triploids)

Publication title or Reference: 

Marker type: 
SSR
Description of the dataset: 

The Musa Genotyping Centre was established at the Laboratory of Molecular Cytogenetics and Cytometry of the Institute of Experimental Botany (IEB), Olomouc, Czech Republic in 2009. A standardized platform for molecular characterization has been developed for Musa germplasm (Christelová et al. 2011). The system is based on 19 microsatellite loci that are scored after the PCR with fluorescently labeled primers and capillary electrophoretic separation with internal standard (GeneScanTM-500 LIZ size standard, Applied Biosystems). The PCR products are multiplexed prior to the separation and loaded onto the automatic 96-capillary ABI 3730xl DNA Analyzer. Electrophoretic separation and signal detection is carried out with default module settings.

Here we provide an Unrooted NJ tree with 171 triploids accession using 19 SSR markers genotyped as described in Christelová et al. 2011.
Source of data: Musa Genotyping Centre
Source of Tree: Institute of Experimental Botany (IEB)

See all accessions used in this study

Showing 40 of 170 accessions
Accession Name Pictures Accession number Species / Group SubSpecies / SubGroup Origin Collection Available for distribution
Ney Poovan ITC0459 AB subgr. Ney Poovan Unknown ITC
Obino l'Ewai ITC0109 AAB subgr. Plantain Unknown ITC
Musa boman ITC1026 boman subsp. boman Papua New Guinea ITC
Yangambi KM5 ITC1123 AAA subgr. Ibota Unknown ITC
Popoulou (CMR) ITC1135 AAB subgr. Maia Maoli/Popoulu Unknown ITC
Ihi U Maohi ITC0733 AAB subgr. Maia Maoli/Popoulu Unknown ITC
Niangafelo ITC0044 AAB subgr. Plantain Unknown ITC
Ntanga 2 ITC0113 AAB subgr. Plantain Unknown ITC
Ntie ITC0192 AAB subgr. Plantain Unknown ITC
Ihitisim ITC0121 AAB subgr. Plantain Unknown ITC
Daluyao ITC0034 AAB subgr. Plantain Philippines ITC
Big Ebanga ITC1129 AAB subgr. Plantain Unknown ITC
Njock Kon ITC1133 AAB subgr. Plantain Unknown ITC
Agbagba ITC0111 AAB subgr. Plantain Unknown ITC
Bom
ITC1438 AA Unknown Vietnam ITC
Heva
ITC0257 AA Unknown Unknown ITC
Diploid Basilan
ITC0438 AA Unknown Philippines ITC
Morong Principe
ITC0445 AA Unknown Unknown ITC
Pisang Berangan
ITC1287 AAA Unknown Unknown ITC
Paji
ITC1305 AAA Unknown Tanzania ITC
Kitarasa
ITC1560 AAA Unknown Tanzania ITC
Mlali
ITC1564 AAA Unknown Tanzania ITC
Americani
ITC0557 AAA Unknown Unknown ITC
2390-2
ITC0553 AAAA Unknown Jamaica ITC
Bagatow
ITC1232 AAB Unknown Papua New Guinea ITC
Mnalouki
ITC0719 AAB Unknown Comoros ITC
Vietnam no.5
ITC1251 acuminata Unknown Unknown ITC
Marges Elargies
ITC0421 acuminata Unknown Indonesia ITC
Balbisiana tetraploide
ITC0454 BBB Unknown Honduras ITC
Poyo
ITC1482 AAA subgr. Cavendish Unknown ITC
Mtwishe
ITC1540 AAA subgr. Cavendish Tanzania ITC
Grande Naine
ITC1586 AAA subgr. Cavendish Unknown ITC
GCTCV-105
ITC1596 AAA subgr. Cavendish Taiwan ITC
Formosana
ITC1597 AAA subgr. Cavendish Taiwan ITC
Pisang Umbuk
ITC0686 AAA subgr. Cavendish Indonesia ITC
Lingu
ITC1485 AAB subgr. Plantain Congo (Kinshasa) ITC
Egbe-o-Mabese
ITC1489 AAB subgr. Plantain Congo (Kinshasa) ITC
Imbelenge
ITC1492 AAB subgr. Plantain Congo (Kinshasa) ITC
Apoka Magbuge
ITC1493 AAB subgr. Plantain Congo (Kinshasa) ITC
Bokpeta
ITC1496 AAB subgr. Plantain Congo (Kinshasa) ITC

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