Musa Genotyping Center Results (diploids)

Publication title or Reference: 

Marker type: 
SSR
Description of the dataset: 

The Musa Genotyping Centre was established at the Laboratory of Molecular Cytogenetics and Cytometry of the Institute of Experimental Botany (IEB), Olomouc, Czech Republic in 2009. A standardized platform for molecular characterization has been developed for Musa germplasm (Christelová et al. 2011). The system is based on 19 microsatellite loci that are scored after the PCR with fluorescently labeled primers and capillary electrophoretic separation with internal standard (GeneScanTM-500 LIZ size standard, Applied Biosystems). The PCR products are multiplexed prior to the separation and loaded onto the automatic 96-capillary ABI 3730xl DNA Analyzer. Electrophoretic separation and signal detection is carried out with default module settings.
Here we provide an Unrooted NJ tree with 221 diploids accessions using 19 SSR markers.
Source of data: Musa Genotyping Centre
Source of Tree: Institute of Experimental Botany (IEB)

See all accessions used in this study

Showing 40 of 219 accessions
Accession Name Pictures Accession number Species / Group SubSpecies / SubGroup Origin Collection Available for distribution
Musa barioensis
ITC1568 Unknown Unknown Unknown ITC
Musa campestris var. Sarawakensis
ITC1517 campestris Unknown Malaysia ITC
Musa campestris var. Limbangensis
ITC1535 campestris Unknown Brunei ITC
Musa coccinea
ITC1647 coccinea Unknown Unknown ITC
Musa L. indet. (cultivar)
ITC1533 Unknown Unknown Thailand ITC
Musa itinerans var. itinerans
ITC1571 Unknown Unknown Unknown ITC
Musa yunnanensis
ITC1573 Unknown Unknown Unknown ITC
Kole
ITC1704 Unknown Unknown Unknown ITC
Mlambichi
ITC1547 Unknown Unknown Tanzania ITC
Kawaputa
ITC0927 Fe'i Unknown Papua New Guinea ITC
Musa itinerans var. Indet. 'Burmese Blue'
ITC1523 itinerans Unknown Thailand ITC
Musa itinerans var. Xishuangbannaensis
ITC1526 itinerans Unknown China ITC
Kunnan
ITC1638 AB subgr. Kunnan India ITC
Musa laterita
ITC1521 laterita Unknown Thailand ITC
Musa laterita
ITC1575 laterita Unknown Unknown ITC
Musa maclayi
ITC1207 maclayi subsp. maclayi Papua New Guinea ITC
Musa maclayi type Hung Si
ITC0614 maclayi subsp. maclayi Papua New Guinea ITC
CIRAD 930
ITC1511 acuminata subsp. malaccensis Guadeloupe ITC
Malaccensis
ITC0074 acuminata subsp. malaccensis Unknown ITC
Musa mannii
ITC1574 mannii Unknown Unknown ITC
Musa monticola
ITC1528 monticola Unknown Malaysia ITC
Ndyali
ITC1552 AA subgr. Mshare Tanzania ITC
Huti green bell
ITC1559 AA subgr. Mshare Tanzania ITC
Makyughu 2-Mshare
ITC1561 AA subgr. Mshare Tanzania ITC
Ijihu inkunku-Mshare
ITC1580 AA subgr. Mshare Tanzania ITC
Mshare
ITC1594 AA subgr. Mshare Tanzania ITC
Halahala
ITC1595 AA subgr. Mshare Tanzania ITC
Musa L. indet.
ITC1576 Unknown Unknown Unknown ITC
Musa cf. mannii
ITC1577 Unknown Unknown Unknown ITC
Chuoi rung hoa soan
ITC1690 Unknown Unknown Vietnam ITC
Chuoi cau rung
ITC1691 Unknown Unknown Unknown ITC
Luholole
ITC1593 AAA subgr. Mutika/Lujugira Tanzania ITC
Elakkie Bale
ITC1635 AB subgr. Ney Poovan India ITC
Musa ornata (red fingers)
ITC1330 ornata Unknown Unknown ITC
Musa ornata 'Macro'
ITC1569 ornata Unknown Unknown ITC
Musa ornata 'Royal Purple'
ITC1570 ornata Unknown Unknown ITC
Kluai Bou
ITC0528 ornata Unknown Unknown ITC
Musa ornata
ITC0637 ornata Unknown Unknown ITC
Kambani Zambia/Gurutu/Blokeni
ITC1599 ABB subgr. Pisang Awak Tanzania ITC
Not Named
ITC0318 AA subgr. Pisang Jari Buaya Indonesia ITC

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