Musa Genotyping Center Results (diploids)

Publication title or Reference: 

Marker type: 
SSR
Description of the dataset: 

The Musa Genotyping Centre was established at the Laboratory of Molecular Cytogenetics and Cytometry of the Institute of Experimental Botany (IEB), Olomouc, Czech Republic in 2009. A standardized platform for molecular characterization has been developed for Musa germplasm (Christelová et al. 2011). The system is based on 19 microsatellite loci that are scored after the PCR with fluorescently labeled primers and capillary electrophoretic separation with internal standard (GeneScanTM-500 LIZ size standard, Applied Biosystems). The PCR products are multiplexed prior to the separation and loaded onto the automatic 96-capillary ABI 3730xl DNA Analyzer. Electrophoretic separation and signal detection is carried out with default module settings.
Here we provide an Unrooted NJ tree with 221 diploids accessions using 19 SSR markers.
Source of data: Musa Genotyping Centre
Source of Tree: Institute of Experimental Botany (IEB)

See all accessions used in this study

Showing 40 of 219 accessions
Accession Name Pictures Accession number Species / Group SubSpecies / SubGroup Origin Collection Available for distribution
Gebi ITC0877 AAB Unknown Papua New Guinea ITC
Honduras ITC0247 balbisiana Unknown Unknown ITC
Musa jackeyi ITC0588 jackeyi Unknown Unknown ITC
Pa (Rayong) ITC0672 acuminata subsp. siamea Thailand ITC
Musa velutina ITC0011 velutina Unknown Unknown ITC
Diploide EMBRAPA 205
ITC1193 AA Unknown Brazil ITC
IRFA 905
ITC1267 AA Unknown Nigeria ITC
Ketan-01
ITC1693 AA Unknown Indonesia ITC
Jarum
ITC1695 AA Unknown Unknown ITC
Lidi Bikittinggi
ITC1696 AA Unknown Indonesia ITC
Sario
ITC1698 AA Unknown Indonesia ITC
Galeo
ITC0259 AA Unknown Unknown ITC
NBA 14
ITC0267 AA Unknown Unknown ITC
Niyarma Yik
ITC0269 AA Unknown Unknown ITC
Djum Tau
ITC0292 AA Unknown Indonesia ITC
Pitu
ITC0294 AA Unknown Unknown ITC
Guyod
ITC0299 AA Unknown Philippines ITC
Pu-te Wey
ITC0447 AA Unknown Malaysia ITC
Pisang Tongat
ITC0063 AA Unknown Unknown ITC
Pisang Sintok
ITC0982 AA Unknown Unknown ITC
PA03-22
ITC1261 AAAB Unknown Brazil ITC
Musa acuminata (11/9-02)
ITC1520 acuminata Unknown Indonesia ITC
Musa acuminata sp.sumatrana
ITC1701 acuminata Unknown Indonesia ITC
A3617/9
ITC0530 acuminata Unknown Unknown ITC
Hybrid
ITC0606 acuminata Unknown Unknown ITC
Hybrid
ITC0608 acuminata Unknown Unknown ITC
Musa acuminata spp. banksii x Musa schizocarpa
ITC0859 acuminata x schizocarpa Unknown Papua New Guinea ITC
Wompa
ITC1152 AS Unknown Papua New Guinea ITC
Musa balbisiana
ITC1527 balbisiana Unknown China ITC
Pisang Klutuk Wulung
ITC1587 balbisiana Unknown Unknown ITC
Lal Velchi
ITC1588 balbisiana Unknown Unknown ITC
Chuoi hot
ITC1681 balbisiana Unknown Vietnam ITC
Singapuri
ITC0248 balbisiana Unknown Unknown ITC
Butuhan, salient apex
ITC0564 balbisiana Unknown Philippines ITC
Butuhan
ITC1074 balbisiana x textilis Unknown Unknown ITC
Musa Beccarii
ITC1516 beccarii Unknown Unknown ITC
Musa beccarii var. Hottana
ITC1529 beccarii Unknown Malaysia ITC
Musa borneensis
ITC1531 borneensis Unknown Malaysia ITC
Musa viridis
ITC1525 Unknown Unknown Vietnam ITC
Musa exotica
ITC1532 Unknown Unknown Vietnam ITC

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