The GWAS panel is a list of diploid accessions (composed of musa acuminata and AA) carefully selected to support Genome-Wide Association Study (GWAS) in banana in order to quickly and accurately link areas of the genome with important traits.
Accessions were fingerprinted using the Genotyping By Sequencing (GBS) method (Elshire RJ et al, 2011) using PSTI restriction enzyme ( NCBI bioproject ). A set of 129,658 unfiltered SNP markers were obtained that were sbsequently filtered with a bioinformatic workflow at South Green Galaxy to get 5,544 robut SNP markers available below
Unfiltered SNP markers from Tassel-GBS (vcf file ~80MB)
Filtered SNP markers (vcf file) (Harvard Dataverse)
The filtered markers were deposited in dbSNP (ss#1971458520-1971464266).
These SNPs mapped on M. acuminata DH Pahang can be explored here
The genetic tree below was calcultated using Darwin.
See all accessions used in this study
| Accession Name | Pictures | Accession number | Species / Group | SubSpecies / SubGroup | Origin | Collection | Available for distribution | |
|---|---|---|---|---|---|---|---|---|
| Malaysian Blood | ITC0568 | AA | Unknown | Unknown | ITC |
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| Selangor 2 | ITC0629 | acuminata | Unknown | Unknown | ITC |
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| Kluai Lep Mu Nang | ITC0533 | AA | Unknown | Unknown | ITC |
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| Pisang Sapon | ITC0679 | AA | Unknown | Indonesia | ITC |
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| Pa (Musore) no.2 | ITC0668 | acuminata | Unknown | Thailand | ITC |
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| Sena | ITC1013 | AA | Unknown | Papua New Guinea | ITC |
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| Uyam | ITC0819 | AA | Unknown | Papua New Guinea | ITC |
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| Pisang Madu | ITC0258 | AA | Unknown | Malaysia | ITC |
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| Pisang Bangkahulu | ITC0689 | AA | Unknown | Indonesia | ITC |
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| Bata Bata | ITC0974 | AA | Unknown | Unknown | ITC |
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| Type 2 | ITC0069 | acuminata | Unknown | Unknown | ITC |
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| Calcutta 4 | ITC0249 | acuminata | subsp. burmannicoides | Myanmar | ITC |
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| Ngu | ITC1358 | AA | subgr. Sucrier | Vietnam | ITC |
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| Yalumia | ITC1220 | AA | Unknown | Papua New Guinea | ITC |
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| Mapua | ITC1244 | AA | Unknown | Papua New Guinea | ITC |
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| Sowmuk | ITC0266 | AA | Unknown | Papua New Guinea | ITC |
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| Pitu | ITC0294 | AA | Unknown | Papua New Guinea | ITC |
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| Waimara | ITC0600 | AA | Unknown | Papua New Guinea | ITC |
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| Navaradam | ITC0770 | AA | Unknown | Papua New Guinea | ITC |
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| Pa (Musore) no.3 | ITC0406 | acuminata | Unknown | Thailand | ITC |
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| Pisang Cici Alas | ITC0415 | acuminata | Unknown | Indonesia | ITC |
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| A3617/9 | ITC0530 | acuminata | Unknown | Unknown | ITC |
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| Waigu | ITC0465 | acuminata | subsp. banksii | Indonesia | ITC |
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| Pahang | ITC0609 | acuminata | subsp. malaccensis | Malaysia | ITC |
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| Truncata | ITC0393 | acuminata | subsp. truncata | Unknown | ITC |
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| Lidi | ITC0395 | AA | Unknown | Unknown | ITC |
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| Pisang Berlin | ITC0611 | AA | Unknown | Indonesia | ITC |
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| Pisang Jari Buaya | ITC0312 | AA | subgr. Pisang Jari Buaya | Malaysia | ITC |
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| Tudlo Tumbaga | ITC1231 | AA | Unknown | Unknown | ITC |
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| Uwati | ITC0373 | AA | Unknown | Papua New Guinea | ITC |
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| Racadag | ITC0434 | AA | Unknown | Philippines | ITC |
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| Tjau Lagada | ITC0090 | AA | Unknown | Indonesia | ITC |
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| Higa | ITC0378 | acuminata | Unknown | Indonesia | ITC |
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| Pisang Serun 404 | ITC1348 | acuminata | subsp. malaccensis | Malaysia | ITC |
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| Pisang Serun 400 | ITC1349 | acuminata | subsp. malaccensis | Malaysia | ITC |
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| Khae (Phrae) | ITC0660 | acuminata | subsp. siamea | Thailand | ITC |
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| Zebrina (G.F.) | ITC0966 | acuminata | subsp. zebrina | Unknown | ITC |
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| Morong Princesa | ITC1150 | AA | Unknown | Unknown | ITC |
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| Akondro Mainty | ITC0281 | AA | Unknown | Unknown | ITC |
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| AAcv Rose | ITC0712 | AA | Unknown | Indonesia | ITC |
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