Genotyping studies

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MGIS Boost cached version.

Some results of molecular characterization (e.g. SSR, DArT, SNP) related to Germplasm accessions in collections can be stored in MGIS.

From an accession:

It redirects you to a page dedicated a genotyping study including:

  • Reference to the study (e.g. publication)
  • Experimental description (e.g. number of accessions, type of genetic algorithm)
  • List of all accessions used in the diversity studies
  • Diversity tree viewer

The diversity tree viewer (see below) is powered by IntreeGreat developed in the South Green bioinfomatics platform.

NGS Markers

MGIS provides access to SNPs allelic diversity from Next-Generation Sequencing data (e.g. GBS or RADseq).

gigwa

The NGS Markers module is powered by Gigwa developed in the South Green bioinfomatics platform.