Taxonomic Reference Collection (TRC)

Publication title or Reference: 
[Anonymous].  0.  Unpublished data.

Marker type: 
SNP
Description of the dataset: 

The TRC is a set of 33 accessions representative of the overall banana diversity that were selected by a panel of experts to be used as references and standards for the characterization and identification of Musa accessions (cultivated and closed relatives). Currently, the TRC is being characterized in 12 partner collections and is used to test the robustness of standard descriptors across environments.

Here we provide a genetic tree of 33 accessions with 12617 SNP markers obtained from GBS (PST1 enzyme). Computed with SNPhylo (Lee et al, 2014) with the following parameters : bootstrap x 100; MAF > 0.05 ; minimum coverage 10 reads.

Source of data and Tree: Bioversity


 

See all accessions used in this study

Showing 33 of 33 accessions
Accession Name Pictures Accession number Species / Group SubSpecies / SubGroup Origin Collection Available for distribution
Safet Velchi ITC0245 AB subgr. Ney Poovan Unknown ITC
Figue Pomme Géante ITC0769 AAB subgr. Silk Unknown ITC
Khai Thong Ruang ITC0662 AAA subgr. Ibota Thailand ITC
Namwa Khom ITC0659 ABB subgr. Pisang Awak Thailand ITC
Pisang Palembang ITC0450 AAB subgr. Pisang Kelat Malaysia ITC
Foconah ITC0649 AAB subgr. Pome Unknown ITC
Pisang Lilin ITC1121 AA Unknown Unknown ITC
Calcutta 4 ITC0249 acuminata subsp. burmannicoides Unknown ITC
Zebrina ITC1177 acuminata subsp. zebrina Unknown ITC
Pelipita ITC0472 ABB Unknown Philippines ITC
Pisang Jari Buaya ITC0312 AA subgr. Pisang Jari Buaya Malaysia ITC
Petite Naine ITC0654 AAA subgr. Cavendish Unknown ITC
Pisang Ceylan ITC1441 AAB subgr. Mysore Unknown ITC
Leite ITC0277 AAA subgr. Rio Unknown ITC
Tomolo ITC1187 AA Unknown Papua New Guinea ITC
Blue Java ITC0361 ABB subgr. Ney Mannan Unknown ITC
Pisang Mas ITC0653 AA subgr. Sucrier Unknown ITC
Tani ITC1120 balbisiana Unknown Unknown ITC
Dole ITC0767 ABB subgr. Bluggoe Unknown ITC
Simili Radjah ITC0123 ABB subgr. Peyan Unknown ITC
Igitsiri (Intuntu) ITC0081 AAA subgr. Mutika/Lujugira Burundi ITC
Uzakan ITC0825 AAB Unknown Papua New Guinea ITC
Mai'a popo'ulu moa ITC1169 AAB subgr. Maia Maoli/Popoulu Unknown ITC
Red Dacca ITC0575 AAA subgr. Red Unknown ITC
Obubit Ntanga green mutant ITC0519 AAB subgr. Plantain Unknown ITC
Paliama ITC0766 acuminata subsp. banksii Unknown ITC
Mbwazirume ITC0084 AAA subgr. Mutika/Lujugira Burundi ITC
Honduras ITC0247 balbisiana Unknown Unknown ITC
Ihitisim ITC0121 AAB subgr. Plantain Unknown ITC
Gros Michel
ITC1481 AAA subgr. Gros Michel Unknown ITC
Monthan
ITC1483 ABB subgr. Monthan Unknown ITC
Pisang Rajah (South Johnstone)
ITC0587 AAB subgr. Pisang Raja Unknown ITC
Orishele
ITC1325 AAB subgr. Plantain Unknown ITC