Musa Genotyping Center Results (triploids)

Marker type: 
SSR
Description of the dataset: 

The Musa Genotyping Centre was established at the Laboratory of Molecular Cytogenetics and Cytometry of the Institute of Experimental Botany (IEB), Olomouc, Czech Republic in 2009. A standardized platform for molecular characterization has been developed for Musa germplasm (Christelová et al. 2011). The system is based on 19 microsatellite loci that are scored after the PCR with fluorescently labeled primers and capillary electrophoretic separation with internal standard (GeneScanTM-500 LIZ size standard, Applied Biosystems). The PCR products are multiplexed prior to the separation and loaded onto the automatic 96-capillary ABI 3730xl DNA Analyzer. Electrophoretic separation and signal detection is carried out with default module settings.

Here we provide an Unrooted NJ tree with 171 triploids accession using 19 SSR markers genotyped as described in Christelová et al. 2011.
Source of data: Musa Genotyping Centre
Source of Tree: Institute of Experimental Botany (IEB)

See all accessions used in this study

Showing 40 of 170 accessions
Accession Name Pictures Accession number Species / Group SubSpecies / SubGroup Origin Collection Available for distribution
Kluai Tiparot ITC0652 ABB Unknown Unknown ITC
Figue Pomme Géante ITC0769 AAB subgr. Silk Unknown ITC
Khai Thong Ruang ITC0662 AAA subgr. Ibota Thailand ITC
Namwa Khom ITC0659 ABB subgr. Pisang Awak Thailand ITC
Pisang Palembang ITC0450 AAB subgr. Pisang Kelat Malaysia ITC
Foconah ITC0649 AAB subgr. Pome Unknown ITC
FHIA-25 ITC1418 Unknown Unknown Honduras ITC
Hom Thong Mokho ITC0671 AAA subgr. Rio Thailand ITC
Bira ITC0945 AAB Unknown Papua New Guinea ITC
Cachaco ITC0643 ABB subgr. Bluggoe Unknown ITC
Pelipita ITC0472 ABB Unknown Philippines ITC
Enshakara ITC1557 AAA subgr. Mutika/Lujugira Tanzania ITC
Valery ITC0048 AAA subgr. Cavendish Unknown ITC
Sar ITC0898 Fe'i Unknown Papua New Guinea ITC
Muracho ITC0036 AAB Unknown Philippines ITC
Petite Naine ITC0654 AAA subgr. Cavendish Unknown ITC
Pisang Ceylan ITC1441 AAB subgr. Mysore Unknown ITC
Kupulik ITC0909 AAB Unknown Papua New Guinea ITC
Prata ana ITC0962 AAB subgr. Pome Unknown ITC
Leite ITC0277 AAA subgr. Rio Unknown ITC
Blue Java ITC0361 ABB subgr. Ney Mannan Unknown ITC
Pisang Raja Bulu ITC0843 AAB subgr. Pisang Raja Indonesia ITC
Pisang Bakar ITC1064 AAA subgr. Ambon Indonesia ITC
Dwarf Cavendish ITC0002 AAA subgr. Cavendish Unknown ITC
Pisang Masak Hijau ITC0340 AAA subgr. Cavendish Unknown ITC
Ice cream ITC0020 ABB subgr. Ney Mannan Gabon ITC
Dole ITC0767 ABB subgr. Bluggoe Unknown ITC
Simili Radjah ITC0123 ABB subgr. Peyan Unknown ITC
Igitsiri (Intuntu) ITC0081 AAA subgr. Mutika/Lujugira Burundi ITC
Uzakan ITC0825 AAB Unknown Papua New Guinea ITC
Cocos ITC0724 AAA subgr. Gros Michel Unknown ITC
Tigua ITC0875 AAB subgr. Iholena Papua New Guinea ITC
Rukumamb Tambey ITC0830 AAB subgr. Iholena Papua New Guinea ITC
Mai'a popo'ulu moa ITC1169 AAB subgr. Maia Maoli/Popoulu Unknown ITC
Red Dacca ITC0575 AAA subgr. Red Unknown ITC
Akpakpak ITC0217 AAB subgr. Plantain Unknown ITC
Obubit Ntanga green mutant ITC0519 AAB subgr. Plantain Unknown ITC
Horul ITC0870 AAB Unknown Papua New Guinea ITC
Mbwazirume ITC1356 AAA subgr. Mutika/Lujugira Unknown ITC
Mbwazirume ITC0084 AAA subgr. Mutika/Lujugira Burundi ITC

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