Musa Genotyping Center Results (triploids)

Publication title or Reference: 

Marker type: 
SSR
Description of the dataset: 

The Musa Genotyping Centre was established at the Laboratory of Molecular Cytogenetics and Cytometry of the Institute of Experimental Botany (IEB), Olomouc, Czech Republic in 2009. A standardized platform for molecular characterization has been developed for Musa germplasm (Christelová et al. 2011). The system is based on 19 microsatellite loci that are scored after the PCR with fluorescently labeled primers and capillary electrophoretic separation with internal standard (GeneScanTM-500 LIZ size standard, Applied Biosystems). The PCR products are multiplexed prior to the separation and loaded onto the automatic 96-capillary ABI 3730xl DNA Analyzer. Electrophoretic separation and signal detection is carried out with default module settings.

Here we provide an Unrooted NJ tree with 171 triploids accession using 19 SSR markers genotyped as described in Christelová et al. 2011.
Source of data: Musa Genotyping Centre
Source of Tree: Institute of Experimental Botany (IEB)

See all accessions used in this study

Showing 40 of 170 accessions
Accession Name Pictures Accession number Species / Group SubSpecies / SubGroup Origin Collection Available for distribution
CIRAD-MU 920
ITC1585 Unknown Unknown Guadeloupe ITC
Ziwa la mwali
ITC1551 Unknown Unknown Tanzania ITC
IBP 5-61
ITC1478 AAA subgr. Gros Michel Cuba ITC
IBP 12
ITC1480 AAA subgr. Gros Michel Cuba ITC
Gros Michel
ITC1481 AAA subgr. Gros Michel Unknown ITC
Balonkawe
ITC0473 ABB subgr. Klue Teparod Philippines ITC
Laknau
ITC0332 AAB subgr. Laknao Unknown ITC
Lep Chang Kut
ITC0647 BBB subgr. Lep Chang Kut Unknown ITC
Poingo
ITC1327 AAB subgr. Maia Maoli/Popoulu Unknown ITC
Popoulou
ITC0335 AAB subgr. Maia Maoli/Popoulu Unknown ITC
Monthan
ITC1483 ABB subgr. Monthan Unknown ITC
Mlelembo
ITC1544 AA subgr. Mshare Tanzania ITC
Enjubo
ITC1543 AAA subgr. Mutika/Lujugira Tanzania ITC
Kisukari usiniguse
ITC1546 AAA subgr. Mutika/Lujugira Tanzania ITC
Nyerere
ITC1548 AAA subgr. Mutika/Lujugira Tanzania ITC
Kitombo
ITC1549 AAA subgr. Mutika/Lujugira Tanzania ITC
Nyamahwa
ITC1555 AAA subgr. Mutika/Lujugira Tanzania ITC
Nyitabunyonyi
ITC1556 AAA subgr. Mutika/Lujugira Tanzania ITC
Luholole
ITC1593 AAA subgr. Mutika/Lujugira Tanzania ITC
Intokatoke
ITC0082 AAA subgr. Mutika/Lujugira Burundi ITC
Kambani (unknown)
ITC1541 AB subgr. Ney Poovan Tanzania ITC
Kayinja
ITC1558 AB subgr. Ney Poovan Tanzania ITC
Pisang Kayu
ITC0420 AAA subgr. Orotava Indonesia ITC
Kambani Zambia/Gurutu/Blokeni
ITC1599 ABB subgr. Pisang Awak Tanzania ITC
Pisang Rajah (South Johnstone)
ITC0587 AAB subgr. Pisang Raja Unknown ITC
Lady Finger (Nelson)
ITC0582 AAB subgr. Pome Unknown ITC
Mzungu mwekundu
ITC1539 AAA subgr. Red Tanzania ITC
Musa rosea-hybrid
ITC1598 rosea Unknown Unknown ITC
Saba
ITC1138 ABB subgr. Saba Unknown ITC
Kambani (Pakapaka?)
ITC1542 AAB subgr. Silk Tanzania ITC
Kipakapaka
ITC1550 AAB subgr. Silk Tanzania ITC
Kipakapaka kampani
ITC1553 AAB subgr. Silk Tanzania ITC
Kipakapaka/Kipukusa/Kisukari
ITC1562 AAB subgr. Silk Tanzania ITC
Kijakazi
ITC1578 AAB subgr. Silk Tanzania ITC
Mimi Abue
ITC0489 AAB subgr. Plantain Unknown ITC
Orishele
ITC1325 AAB subgr. Plantain Nigeria ITC
Obubit Ukom
ITC0235 AAB subgr. Plantain Unknown ITC
Eba Oboikpa
ITC0514 AAB subgr. Plantain Unknown ITC
Kaamenko
ITC0120 AAB subgr. Plantain Unknown ITC
Ntanga 5
ITC0512 AAB subgr. Plantain Unknown ITC

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