The Musa Genotyping Centre was established at the Laboratory of Molecular Cytogenetics and Cytometry of the Institute of Experimental Botany (IEB), Olomouc, Czech Republic in 2009. A standardized platform for molecular characterization has been developed for Musa germplasm (Christelová et al. 2011). The system is based on 19 microsatellite loci that are scored after the PCR with fluorescently labeled primers and capillary electrophoretic separation with internal standard (GeneScanTM-500 LIZ size standard, Applied Biosystems). The PCR products are multiplexed prior to the separation and loaded onto the automatic 96-capillary ABI 3730xl DNA Analyzer. Electrophoretic separation and signal detection is carried out with default module settings.
Here we provide an Unrooted NJ tree with 171 triploids accession using 19 SSR markers genotyped as described in Christelová et al. 2011.
Source of data: Musa Genotyping Centre
Source of Tree: Institute of Experimental Botany (IEB)
See all accessions used in this study
| Accession Name | Pictures | Accession number | Species / Group | SubSpecies / SubGroup | Origin |
Collection |
Available for distribution | |
|---|---|---|---|---|---|---|---|---|
| Mimi Abue | ITC0489 | AAB | subgr. Plantain | Unknown | ITC |
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| Ntanga 5 | ITC0512 | AAB | subgr. Plantain | Unknown | ITC |
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| Eba Oboikpa | ITC0514 | AAB | subgr. Plantain | Unknown | ITC |
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| Obubit Ntanga green mutant | ITC0519 | AAB | subgr. Plantain | Unknown | ITC |
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| 2390-2 | ITC0553 | AAAA | Unknown | Jamaica | ITC |
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| Americani | ITC0557 | AAA | Unknown | Unknown | ITC |
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| Red Dacca | ITC0575 | AAA | subgr. Red | Unknown | ITC |
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| Lady Finger (Nelson) | ITC0582 | AAB | subgr. Pome | Unknown | ITC |
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| Pisang Rajah (South Johnstone) | ITC0587 | AAB | subgr. Pisang Raja | Unknown | ITC |
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| Maqueño | ITC0631 | AAB | subgr. Plantain | Unknown | ITC |
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| Cachaco | ITC0643 | ABB | subgr. Bluggoe | Unknown | ITC |
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| Lep Chang Kut | ITC0647 | BBB | subgr. Lep Chang Kut | Unknown | ITC |
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| Foconah | ITC0649 | AAB | subgr. Pome | Unknown | ITC |
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| Kluai Tiparot | ITC0652 | ABB | Unknown | Unknown | ITC |
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| Petite Naine | ITC0654 | AAA | subgr. Cavendish | Unknown | ITC |
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| Namwa Khom | ITC0659 | ABB | subgr. Pisang Awak | Thailand | ITC |
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| Khai Thong Ruang | ITC0662 | AAA | subgr. Ibota | Thailand | ITC |
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| Hom Thong Mokho | ITC0671 | AAA | subgr. Rio | Thailand | ITC |
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| Pisang Umbuk | ITC0686 | AAA | subgr. Cavendish | Indonesia | ITC |
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| Nzumoigne | ITC0718 | AAB | subgr. Plantain | Comoros | ITC |
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| Mnalouki | ITC0719 | AAB | Unknown | Comoros | ITC |
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| Cocos | ITC0724 | AAA | subgr. Gros Michel | Unknown | ITC |
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| Ihi U Maohi | ITC0733 | AAB | subgr. Maia Maoli/Popoulu | Unknown | ITC |
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| Dole | ITC0767 | ABB | subgr. Bluggoe | Unknown | ITC |
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| Figue Pomme Géante | ITC0769 | AAB | subgr. Silk | Unknown | ITC |
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| Uzakan | ITC0825 | AAB | Unknown | Papua New Guinea | ITC |
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| Rukumamb Tambey | ITC0830 | AAB | subgr. Iholena | Papua New Guinea | ITC |
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| Pisang Raja Bulu | ITC0843 | AAB | subgr. Pisang Raja | Indonesia | ITC |
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| Horul | ITC0870 | AAB | Unknown | Papua New Guinea | ITC |
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| Tigua | ITC0875 | AAB | subgr. Iholena | Papua New Guinea | ITC |
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| Sar | ITC0898 | Fe'i | Unknown | Papua New Guinea | ITC |
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| Kupulik | ITC0909 | AAB | Unknown | Papua New Guinea | ITC |
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| Bira | ITC0945 | AAB | Unknown | Papua New Guinea | ITC |
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| Prata ana | ITC0962 | AAB | subgr. Pome | Unknown | ITC |
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| Musa boman | ITC1026 | boman | subsp. boman | Papua New Guinea | ITC |
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| Pisang Bakar | ITC1064 | AAA | subgr. Ambon | Indonesia | ITC |
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| Yangambi KM5 | ITC1123 | AAA | subgr. Ibota | Unknown | ITC |
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| Batard | ITC1126 | AAB | subgr. Plantain | Unknown | ITC |
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| 3 Vert | ITC1127 | AAB | subgr. Plantain | Unknown | ITC |
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| Big Ebanga | ITC1129 | AAB | subgr. Plantain | Unknown | ITC |
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