Musa Genotyping Center Results (diploids)

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Publication title or Reference: 

Marker type: 
SSR
Description of the dataset: 

The Musa Genotyping Centre was established at the Laboratory of Molecular Cytogenetics and Cytometry of the Institute of Experimental Botany (IEB), Olomouc, Czech Republic in 2009. A standardized platform for molecular characterization has been developed for Musa germplasm (Christelová et al. 2011). The system is based on 19 microsatellite loci that are scored after the PCR with fluorescently labeled primers and capillary electrophoretic separation with internal standard (GeneScanTM-500 LIZ size standard, Applied Biosystems). The PCR products are multiplexed prior to the separation and loaded onto the automatic 96-capillary ABI 3730xl DNA Analyzer. Electrophoretic separation and signal detection is carried out with default module settings.
Here we provide an Unrooted NJ tree with 221 diploids accessions using 19 SSR markers.
Source of data: Musa Genotyping Centre
Source of Tree: Institute of Experimental Botany (IEB)

See all accessions used in this study

Showing 40 of 219 accessions
Accession Name Pictures Accession number Species / Group SubSpecies / SubGroup Origin Collectionsort descending Available for distribution
Pisang Kermian ITC0437 AA Unknown Malaysia ITC
Pu-te La-Bum ITC0446 AA Unknown Malaysia ITC
Pu-te Wey
ITC0447 AA Unknown Malaysia ITC
Waigu ITC0465 acuminata subsp. banksii Unknown ITC
Pisang Buntal
ITC0480 AA subgr. Sucrier Malaysia ITC
Kluai Bou
ITC0528 ornata subsp. ornata Unknown ITC
A3617/9
ITC0530 acuminata Unknown Unknown ITC
Kluai Lep Mu Nang ITC0533 AA Unknown Unknown ITC
Musa textilis ITC0539 textilis subsp. textilis Unknown ITC
Musa mannii H. Wendl
ITC0543 sanguinea subsp. sanguinea Unknown ITC
Balbisiana ITC0545 balbisiana Unknown Unknown ITC
Butuhan, salient apex
ITC0564 balbisiana Unknown Philippines ITC
Malaysian Blood ITC0568 AA Unknown Unknown ITC
Musa jackeyi ITC0588 jackeyi subsp. jackeyi Unknown ITC
Waimara ITC0600 AA Unknown Papua New Guinea ITC
Hawain 3 ITC0602 acuminata subsp. banksii Papua New Guinea ITC
Somani ITC0603 AA Unknown Papua New Guinea ITC
Hybrid
ITC0606 acuminata Unknown Indonesia ITC
Hybrid
ITC0608 acuminata Unknown Unknown ITC
Pahang ITC0609 acuminata subsp. malaccensis Malaysia ITC
Tuu Gia ITC0610 AA Unknown Unknown ITC
Pisang Berlin ITC0611 AA Unknown Unknown ITC
Mambee Thu ITC0612 AA Unknown Unknown ITC
Musa maclayi type Hung Si ITC0614 maclayi subsp. maclayi Papua New Guinea ITC
Banksii ITC0620 acuminata subsp. banksii Papua New Guinea ITC
Banksii ITC0623 acuminata subsp. banksii Papua New Guinea ITC
Selangor 2 ITC0629 acuminata Unknown Unknown ITC
Musa ornata
ITC0637 ornata subsp. ornata Unknown ITC
Musa velutina ITC0638 velutina subsp. velutina Unknown ITC
Pisang Mas ITC0653 AA subgr. Sucrier Unknown ITC
Khae (Phrae) ITC0660 acuminata subsp. siamea Thailand ITC
Khai Thong Ruang ITC0662 AAA subgr. Ibota Thailand ITC
Pa (Musore) no.2 ITC0668 acuminata Unknown Thailand ITC
Pa (Rayong) ITC0672 acuminata subsp. siamea Thailand ITC
Pisang Sapon ITC0679 AA Unknown Indonesia ITC
Pisang Pipit ITC0685 AA Unknown Indonesia ITC
Pisang Bangkahulu ITC0689 AA Unknown Indonesia ITC
AAcv Rose ITC0712 AA Unknown Indonesia ITC
Maia Oa ITC0728 acuminata subsp. zebrina Unknown ITC
Paliama ITC0766 acuminata subsp. banksii Unknown ITC

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