Musa Genotyping Center Results (diploids)

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The Musa Genotyping Centre was established at the Laboratory of Molecular Cytogenetics and Cytometry of the Institute of Experimental Botany (IEB), Olomouc, Czech Republic in 2009. A standardized platform for molecular characterization has been developed for Musa germplasm (Christelová et al. 2011). The system is based on 19 microsatellite loci that are scored after the PCR with fluorescently labeled primers and capillary electrophoretic separation with internal standard (GeneScanTM-500 LIZ size standard, Applied Biosystems). The PCR products are multiplexed prior to the separation and loaded onto the automatic 96-capillary ABI 3730xl DNA Analyzer. Electrophoretic separation and signal detection is carried out with default module settings.
Here we provide an Unrooted NJ tree with 221 diploids accessions using 19 SSR markers.
Source of data: Musa Genotyping Centre
Source of Tree: Institute of Experimental Botany (IEB)

See all accessions used in this study

Showing 19 of 219 accessions
Accession Name Pictures Accession number Species / Group SubSpecies / SubGroup Origin Collection Available for distribution
Kambani Zambia/Gurutu/Blokeni
ITC1599 ABB subgr. Pisang Awak Tanzania ITC
Not Named
ITC0318 AA subgr. Pisang Jari Buaya Indonesia ITC
Musa rubinea
ITC1518 Unknown Unknown China ITC
M. x fennicae
ITC1522 Unknown Unknown Finland ITC
Musa ornata x violacea
ITC1524 Unknown Unknown Unknown ITC
Musa siamensis
ITC1534 Unknown Unknown Thailand ITC
Musa rosea x ornata
ITC1572 Unknown Unknown Unknown ITC
Musa rosea x siamensis
ITC1592 Unknown Unknown Unknown ITC
Musa rosea
ITC1591 rosea Unknown Unknown ITC
Musa rosea-hybrid
ITC1598 rosea Unknown Unknown ITC
Musa rubra
ITC1590 rubra Unknown Unknown ITC
Musa mannii H. Wendl
ITC0543 sanguinea subsp. sanguinea Unknown ITC
ITC0846 schizocarpa Unknown Papua New Guinea ITC
ITC0856 schizocarpa Unknown Papua New Guinea ITC
Mwitu pemba
ITC1545 AAB subgr. Silk Tanzania ITC
ITC1578 AAB subgr. Silk Tanzania ITC
Pisang Buntal
ITC0480 AA subgr. Sucrier Malaysia ITC
Musa violascens
ITC1514 violascens Unknown Malaysia ITC
Chuoi rung hoa sen
ITC1689 viridis Unknown Vietnam ITC