DArT whole genome profiling of ITC accessions

Publication title or Reference: 

Marker type: 
DArT
Description of the dataset: 

This study was composed of 94 wild accessions and of 481 cultivated accessions. Darwin 5.0 (Perrier and Jacquemoud-Collet, 2006; Perrier et al., 2003) was used to calculate genetic distances between pairs of the 535 accessions (out of 575 of the published study). To do so, both modalities (0,1) were given equal weight using the Sokal and Michener (1958) dissimilarity index as the proportion of unmatching markers. we built a neighbor-joining (NJ) tree (Saitou and Nei, 1987) with the diploid accessions composed of A and B genomes only . With regard to the evolutionary history of cultivated bananas, we then built a second NJ tree with all the accessions composed of A and B genomes under the constraint of the diploid tree topology.

See all accessions used in this study

Showing 40 of 531 accessions
Accession Name Pictures Accession number Species / Group SubSpecies / SubGroup Origin Collection Available for distribution
Banksii ITC0619 acuminata subsp. banksii Papua New Guinea ITC
Banksii ITC0621 acuminata subsp. banksii Papua New Guinea ITC
Paliama ITC0766 acuminata subsp. banksii Unknown ITC
Banksii ITC0806 acuminata subsp. banksii Papua New Guinea ITC
Musa acuminata ssp. banksii ITC0885 acuminata subsp. banksii Papua New Guinea ITC
Musa acuminata ssp. banksii ITC0896 acuminata subsp. banksii Papua New Guinea ITC
Banksii ITC0955 acuminata subsp. banksii Papua New Guinea ITC
Long Tavoy ITC0283 acuminata subsp. burmannica Unknown ITC
Umalag ITC0550 AAA subgr. Cavendish Unknown ITC
Gros Michel ITC0484 AAA subgr. Gros Michel India ITC
Luba ITC0802 AAB subgr. Iholena Papua New Guinea ITC
Kumunamba ITC0824 AAB subgr. Iholena Papua New Guinea ITC
Rukumamb ITC0831 AAB subgr. Iholena Papua New Guinea ITC
Tumay ITC0874 AAB subgr. Iholena Papua New Guinea ITC
Selangor ITC1060 acuminata subsp. malaccensis Unknown ITC
Mbwazirume ITC1356 AAA subgr. Mutika/Lujugira Unknown ITC
Mbwazirume ITC0084 AAA subgr. Mutika/Lujugira Burundi ITC
Figue mignonne ITC0540 ABB subgr. Pisang Awak Unknown ITC
Saing Todloh ITC0316 AA subgr. Pisang Jari Buaya Philippines ITC
Mushu ITC0615 schizocarpa Unknown Papua New Guinea ITC
Atali Kiogo ITC0208 AAB subgr. Plantain Unknown ITC
Obino l'Ewai ITC0109 AAB subgr. Plantain Unknown ITC
Truncata ITC0393 acuminata subsp. truncata Unknown ITC
Buitenzorg ITC1178 acuminata subsp. zebrina Unknown ITC
Maka ITC1018 AA Unknown Papua New Guinea ITC
Kwonta ITC1020 AA Unknown Papua New Guinea ITC
Veinte Cohol ITC1031 AA Unknown Unknown ITC
NBB 11 ITC0270 AA Unknown Unknown ITC
Tjau Lagada ITC0090 AA Unknown Unknown ITC
Apindikay ITC0985 AA Unknown Papua New Guinea ITC
Inarnibal ITC0477 AAA Unknown Philippines ITC
Pisang Glintong ITC0683 AAA Unknown Indonesia ITC
Marau ITC0772 AAA Unknown Papua New Guinea ITC
Lagun Vunalir ITC0789 AAA Unknown Papua New Guinea ITC
Ambiri ITC0823 AAA Unknown Papua New Guinea ITC
Kunaimp ITC0836 AAB Unknown Papua New Guinea ITC
Honduras ITC0247 balbisiana Unknown Unknown ITC
Yangambi KM5 ITC1123 AAA subgr. Ibota Unknown ITC
Ihitisim ITC0121 AAB subgr. Plantain Unknown ITC
Apantu ITC0223 AAB subgr. Plantain Unknown ITC

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