DArT whole genome profiling of ITC accessions

Publication title or Reference: 

Marker type: 
DArT
Description of the dataset: 

This study was composed of 94 wild accessions and of 481 cultivated accessions. Darwin 5.0 (Perrier and Jacquemoud-Collet, 2006; Perrier et al., 2003) was used to calculate genetic distances between pairs of the 535 accessions (out of 575 of the published study). To do so, both modalities (0,1) were given equal weight using the Sokal and Michener (1958) dissimilarity index as the proportion of unmatching markers. we built a neighbor-joining (NJ) tree (Saitou and Nei, 1987) with the diploid accessions composed of A and B genomes only . With regard to the evolutionary history of cultivated bananas, we then built a second NJ tree with all the accessions composed of A and B genomes under the constraint of the diploid tree topology.

See all accessions used in this study

Showing 11 of 531 accessions
Accession Name Pictures Accession number Species / Group SubSpecies / SubGroup Origin Collection Available for distribution
Bungaoisan
ITC0033 AAB subgr. Plantain Indonesia ITC
Kelong Mekintu
ITC0200 AAB subgr. Plantain Unknown ITC
Mbi Egome 1
ITC0215 AAB subgr. Plantain Unknown ITC
Njombe N°2
ITC1124 AAB subgr. Plantain Unknown ITC
Red Yade
ITC1140 AAB subgr. Plantain Unknown ITC
Cemsa 1735
ITC0398 AAB subgr. Plantain Unknown ITC
Plantain no.3
ITC0498 AAB subgr. Plantain Unknown ITC
Corne 1
ITC0754 AAB subgr. Plantain Unknown ITC
Pisang Buntal
ITC0480 AA subgr. Sucrier Malaysia ITC
Monyet
ITC1179 acuminata subsp. zebrina Unknown ITC
Maia Oa
ITC0728 acuminata subsp. zebrina Unknown ITC

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