DArT whole genome profiling of ITC accessions

Publication title or Reference: 

Marker type: 
DArT
Description of the dataset: 

This study was composed of 94 wild accessions and of 481 cultivated accessions. Darwin 5.0 (Perrier and Jacquemoud-Collet, 2006; Perrier et al., 2003) was used to calculate genetic distances between pairs of the 535 accessions (out of 575 of the published study). To do so, both modalities (0,1) were given equal weight using the Sokal and Michener (1958) dissimilarity index as the proportion of unmatching markers. we built a neighbor-joining (NJ) tree (Saitou and Nei, 1987) with the diploid accessions composed of A and B genomes only . With regard to the evolutionary history of cultivated bananas, we then built a second NJ tree with all the accessions composed of A and B genomes under the constraint of the diploid tree topology.

See all accessions used in this study

Showing 40 of 531 accessions
Accession Name Pictures Accession number Species / Group SubSpecies / SubGroup Origin Collection Available for distribution
Koutri
ITC0720 AAA subgr. Cavendish Comoros ITC
One Hand Planty
ITC0184 AAB subgr. Plantain Unknown ITC
Lysoka
ITC0186 AAB subgr. Plantain Unknown ITC
Dwarf French Plantain
ITC0321 AAB subgr. Plantain Unknown ITC
Banane Rouge
ITC1040 Unknown Unknown Unknown ITC
Pisang Kenning
ITC1298 Unknown Unknown Indonesia ITC
IB-99
ITC1447 Unknown Unknown Indonesia ITC
Mutant Palmira
ITC0633 Unknown Unknown Unknown ITC
JD Yangambi
ITC1336 AAA subgr. Ibota Unknown ITC
Balonkawe
ITC0473 ABB subgr. Klue Teparod Philippines ITC
Mai'a maoli koa'e
ITC1167 AAB subgr. Maia Maoli/Popoulu Unknown ITC
Mai'a popo'ulu lahilahi
ITC1171 AAB subgr. Maia Maoli/Popoulu Unknown ITC
Popoulou
ITC0335 AAB subgr. Maia Maoli/Popoulu Unknown ITC
Pisang Kra
ITC1345 acuminata subsp. malaccensis Malaysia ITC
Malaccensis
ITC0074 acuminata subsp. malaccensis Unknown ITC
Ngenge
ITC1166 AAA subgr. Mutika/Lujugira Unknown ITC
Isha
ITC0167 AAA subgr. Mutika/Lujugira Unknown ITC
Bakurura
ITC0170 AAA subgr. Mutika/Lujugira Unknown ITC
Kibungo I
ITC0172 AAA subgr. Mutika/Lujugira Unknown ITC
Intokatoke
ITC0082 AAA subgr. Mutika/Lujugira Burundi ITC
Rajapuri India
ITC0280 AAB subgr. Nadan Unknown ITC
Pata
ITC0500 ABB subgr. Ney Mannan Unknown ITC
Kunnan
ITC1034 AB subgr. Ney Poovan Unknown ITC
Pisang Kayu
ITC0420 AAA subgr. Orotava Indonesia ITC
Nzizi
ITC0334 ABB subgr. Peyan Unknown ITC
Kluai Namwa Khom
ITC0526 ABB subgr. Pisang Awak Unknown ITC
Bom
ITC0053 ABB subgr. Pisang Awak Unknown ITC
Kayinja
ITC0087 ABB subgr. Pisang Awak Unknown ITC
Not Named
ITC0318 AA subgr. Pisang Jari Buaya Indonesia ITC
Walha
ITC1033 AAB subgr. Pome Unknown ITC
Lady Finger (Nelson)
ITC0582 AAB subgr. Pome Unknown ITC
Figue Rose Naine
ITC1159 AAA subgr. Red Unknown ITC
Green Red
ITC0485 AAA subgr. Red Unknown ITC
Ojue
ITC0731 AAA subgr. Red Unknown ITC
Saba
ITC1138 ABB subgr. Saba Unknown ITC
Yangambi no.2
ITC1275 AAB subgr. Silk Unknown ITC
Orishele
ITC1325 AAB subgr. Plantain Unknown ITC
Gabon 2
ITC0017 AAB subgr. Plantain Gabon ITC
Plantain no.17
ITC0352 AAB subgr. Plantain Unknown ITC
Congo 2
ITC0027 AAB subgr. Plantain Unknown ITC

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