DArT whole genome profiling of ITC accessions

Publication title or Reference: 

Marker type: 
DArT
Description of the dataset: 

This study was composed of 94 wild accessions and of 481 cultivated accessions. Darwin 5.0 (Perrier and Jacquemoud-Collet, 2006; Perrier et al., 2003) was used to calculate genetic distances between pairs of the 535 accessions (out of 575 of the published study). To do so, both modalities (0,1) were given equal weight using the Sokal and Michener (1958) dissimilarity index as the proportion of unmatching markers. we built a neighbor-joining (NJ) tree (Saitou and Nei, 1987) with the diploid accessions composed of A and B genomes only . With regard to the evolutionary history of cultivated bananas, we then built a second NJ tree with all the accessions composed of A and B genomes under the constraint of the diploid tree topology.

See all accessions used in this study

Showing 40 of 531 accessions
Accession Name Pictures Accession number Species / Group SubSpecies / SubGroup Origin Collection Available for distribution
Yapu Yapu ITC0923 AA Unknown Papua New Guinea ITC
Buka ITC0938 AA Unknown Papua New Guinea ITC
Yendisi ITC0942 AA Unknown Papua New Guinea ITC
Avalira ITC0986 AA Unknown Papua New Guinea ITC
Tabunatar ITC0988 AA Unknown Papua New Guinea ITC
Duhoy ITC1182 AAA Unknown Unknown ITC
Samba ITC0715 AAA Unknown Comoros ITC
Bagul ITC0814 AAA Unknown Papua New Guinea ITC
Yeldem-banz ITC0835 AAA Unknown Papua New Guinea ITC
Kumbak ITC0844 AAA Unknown Papua New Guinea ITC
Mise'ehina ITC0952 AAA Unknown Papua New Guinea ITC
Gamaha ITC1006 AAB Unknown Papua New Guinea ITC
Yourie ITC0826 AAB Unknown Papua New Guinea ITC
Agu ITC0833 AAB Unknown Papua New Guinea ITC
Horul ITC0870 AAB Unknown Papua New Guinea ITC
Wisu ITC0880 AAB Unknown Papua New Guinea ITC
Auko ITC1239 AB Unknown Papua New Guinea ITC
Auko ITC0983 AB Unknown Papua New Guinea ITC
Auko ITC0987 AB Unknown Papua New Guinea ITC
Vunapope ITC0990 AB Unknown Papua New Guinea ITC
Chuoi Nam ITC1382 ABB Unknown Vietnam ITC
Rana ITC0804 ABB Unknown Papua New Guinea ITC
Bengani ITC0855 ABB Unknown Papua New Guinea ITC
God Mun ITC0805 peekelii subsp. angustigemma Papua New Guinea ITC
Hawain No.2 ITC1209 acuminata subsp. banksii Papua New Guinea ITC
Banksii ITC0619 acuminata subsp. banksii Papua New Guinea ITC
Paliama ITC0766 acuminata subsp. banksii Unknown ITC
Musa acuminata ssp. banksii ITC0885 acuminata subsp. banksii Papua New Guinea ITC
Musa acuminata ssp. banksii ITC0896 acuminata subsp. banksii Papua New Guinea ITC
Banksii ITC0955 acuminata subsp. banksii Papua New Guinea ITC
Long Tavoy ITC0283 acuminata subsp. burmannica Unknown ITC
Umalag ITC0550 AAA subgr. Cavendish Unknown ITC
Gros Michel ITC0484 AAA subgr. Gros Michel Unknown ITC
Luba ITC0802 AAB subgr. Iholena Papua New Guinea ITC
Kumunamba ITC0824 AAB subgr. Iholena Papua New Guinea ITC
Tumay ITC0874 AAB subgr. Iholena Papua New Guinea ITC
Selangor ITC1060 acuminata subsp. malaccensis Unknown ITC
Mbwazirume ITC0084 AAA subgr. Mutika/Lujugira Burundi ITC
Saing Todloh ITC0316 AA subgr. Pisang Jari Buaya Unknown ITC
Mushu ITC0615 schizocarpa Unknown Papua New Guinea ITC

Pages