DArT whole genome profiling of ITC accessions

Publication title or Reference: 

Marker type: 
DArT
Description of the dataset: 

This study was composed of 94 wild accessions and of 481 cultivated accessions. Darwin 5.0 (Perrier and Jacquemoud-Collet, 2006; Perrier et al., 2003) was used to calculate genetic distances between pairs of the 535 accessions (out of 575 of the published study). To do so, both modalities (0,1) were given equal weight using the Sokal and Michener (1958) dissimilarity index as the proportion of unmatching markers. we built a neighbor-joining (NJ) tree (Saitou and Nei, 1987) with the diploid accessions composed of A and B genomes only . With regard to the evolutionary history of cultivated bananas, we then built a second NJ tree with all the accessions composed of A and B genomes under the constraint of the diploid tree topology.

See all accessions used in this study

Showing 40 of 531 accessions
Accession Name Pictures Accession number Species / Group SubSpecies / SubGroup Origin Collection Available for distribution
Prata ITC0207 AAB subgr. Pome Unknown ITC
Pome ITC0076 AAB subgr. Pome Unknown ITC
Orishele ITC0517 AAB subgr. Plantain Unknown ITC
Somani ITC0603 AA Unknown Papua New Guinea ITC
Kekiau ITC0776 AA Unknown Papua New Guinea ITC
Katual no.2 ITC0786 AA Unknown Papua New Guinea ITC
Pama ITC0797 AA Unknown Papua New Guinea ITC
Sihir ITC0810 AA Unknown Papua New Guinea ITC
Kenar ITC0816 AA Unknown Papua New Guinea ITC
Kungor ITC0834 AA Unknown Papua New Guinea ITC
Bega ITC0838 AA Unknown Papua New Guinea ITC
Mala ITC0869 AA Unknown Papua New Guinea ITC
Kwosriake ITC0882 AA Unknown Papua New Guinea ITC
Odwa ITC0889 AA Unknown Papua New Guinea ITC
Fu Des ITC0939 AA Unknown Papua New Guinea ITC
Kwaro ITC0943 AA Unknown Papua New Guinea ITC
Wiliman ITC0949 AA Unknown Papua New Guinea ITC
Auko ITC1239 AB Unknown Papua New Guinea ITC
Vunapope ITC0990 AB Unknown Papua New Guinea ITC
Banksii ITC0867 acuminata subsp. banksii Papua New Guinea ITC
Musa acuminata ssp. banksii ITC0879 acuminata subsp. banksii Papua New Guinea ITC
Musa acuminata ssp. banksii ITC0885 acuminata subsp. banksii Papua New Guinea ITC
Giant Parfitt ITC1246 AAA subgr. Cavendish Unknown ITC
Cocos ITC0724 AAA subgr. Gros Michel Unknown ITC
Tigua ITC0875 AAB subgr. Iholena Papua New Guinea ITC
Borneo ITC0253 acuminata subsp. microcarpa Unknown ITC
West India Banana ITC0734 AAB subgr. Pome Unknown ITC
Yangambi no.2 ITC1275 AAB subgr. Silk Unknown ITC
Kar Ngou ITC0196 AAB subgr. Plantain Unknown ITC
Ivi Ivi ITC0919 AA Unknown Papua New Guinea ITC
Kunaimp ITC0836 AAB Unknown Papua New Guinea ITC
Tango ITC1012 AA Unknown Papua New Guinea ITC
Spiral ITC1206 AA Unknown Papua New Guinea ITC
Vudu Beo ITC1211 AA Unknown Papua New Guinea ITC
Tapatuput ITC0594 AA Unknown Papua New Guinea ITC
Japaraka no.2 ITC0605 AA Unknown Papua New Guinea ITC
Agul ITC0782 AA Unknown Papua New Guinea ITC
Tamai ITC0784 AA Unknown Papua New Guinea ITC
Katual Vunalir ITC0788 AA Unknown Papua New Guinea ITC
Garunga ITC0798 AA Unknown Papua New Guinea ITC

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