DArT whole genome profiling of ITC accessions

Publication title or Reference: 

Marker type: 
DArT
Description of the dataset: 

This study was composed of 94 wild accessions and of 481 cultivated accessions. Darwin 5.0 (Perrier and Jacquemoud-Collet, 2006; Perrier et al., 2003) was used to calculate genetic distances between pairs of the 535 accessions (out of 575 of the published study). To do so, both modalities (0,1) were given equal weight using the Sokal and Michener (1958) dissimilarity index as the proportion of unmatching markers. we built a neighbor-joining (NJ) tree (Saitou and Nei, 1987) with the diploid accessions composed of A and B genomes only . With regard to the evolutionary history of cultivated bananas, we then built a second NJ tree with all the accessions composed of A and B genomes under the constraint of the diploid tree topology.

See all accessions used in this study

Showing 40 of 531 accessions
Accession Name Pictures Accession number Species / Group SubSpecies / SubGroup Origin Collection Available for distribution
Borneo ITC0253 acuminata subsp. microcarpa Unknown ITC
West India Banana ITC0734 AAB subgr. Pome Unknown ITC
Yangambi no.2 ITC1275 AAB subgr. Silk Unknown ITC
Kar Ngou ITC0196 AAB subgr. Plantain Unknown ITC
Ivi Ivi ITC0919 AA Unknown Papua New Guinea ITC
Tango ITC1012 AA Unknown Papua New Guinea ITC
Spiral ITC1206 AA Unknown Papua New Guinea ITC
Vudu Beo ITC1211 AA Unknown Papua New Guinea ITC
Tapatuput ITC0594 AA Unknown Papua New Guinea ITC
Japaraka no.2 ITC0605 AA Unknown Papua New Guinea ITC
Agul ITC0782 AA Unknown Papua New Guinea ITC
Tamai ITC0784 AA Unknown Papua New Guinea ITC
Katual Vunalir ITC0788 AA Unknown Papua New Guinea ITC
Garunga ITC0798 AA Unknown Papua New Guinea ITC
Sepi ITC0849 AA Unknown Papua New Guinea ITC
Wikago ITC0888 AA Unknown Papua New Guinea ITC
Adina ITC0893 AA Unknown Papua New Guinea ITC
Udiwasi ITC0930 AA Unknown Papua New Guinea ITC
Bud ITC0992 AA Unknown Papua New Guinea ITC
Hochuchu ITC0549 AAA Unknown Unknown ITC
Pagatau ITC0595 AAA Unknown Papua New Guinea ITC
Banksii ITC1219 acuminata subsp. banksii Papua New Guinea ITC
Rukumamb Tambey ITC0830 AAB subgr. Iholena Papua New Guinea ITC
Intama ITC0153 AAA subgr. Mutika/Lujugira Unknown ITC
Improved Lady Finger ITC0336 AAB subgr. Pome Unknown ITC
Hawain 3 ITC0602 acuminata subsp. banksii Papua New Guinea ITC
Mai'a popo'ulu moa ITC1169 AAB subgr. Maia Maoli/Popoulu Unknown ITC
Kasaska ITC0591 AA Unknown Papua New Guinea ITC
Yenai ITC0774 AA Unknown Papua New Guinea ITC
Gorop ITC0778 AA Unknown Papua New Guinea ITC
Aivip ITC0785 AA Unknown Papua New Guinea ITC
Enar ITC0818 AA Unknown Papua New Guinea ITC
Kuspaka ITC0840 AA Unknown Papua New Guinea ITC
Awondaeke ITC0884 AA Unknown Papua New Guinea ITC
Gonub ITC0995 AA Unknown Papua New Guinea ITC
Waema ITC0922 AAB Unknown Papua New Guinea ITC
Daru ITC0795 ABB Unknown Papua New Guinea ITC
Hawain 2 ITC0616 acuminata subsp. banksii Papua New Guinea ITC
Banksii ITC0620 acuminata subsp. banksii Papua New Guinea ITC
Banksii ITC0806 acuminata subsp. banksii Papua New Guinea ITC

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