DArT whole genome profiling of ITC accessions

Publication title or Reference: 

Marker type: 
DArT
Description of the dataset: 

This study was composed of 94 wild accessions and of 481 cultivated accessions. Darwin 5.0 (Perrier and Jacquemoud-Collet, 2006; Perrier et al., 2003) was used to calculate genetic distances between pairs of the 535 accessions (out of 575 of the published study). To do so, both modalities (0,1) were given equal weight using the Sokal and Michener (1958) dissimilarity index as the proportion of unmatching markers. we built a neighbor-joining (NJ) tree (Saitou and Nei, 1987) with the diploid accessions composed of A and B genomes only . With regard to the evolutionary history of cultivated bananas, we then built a second NJ tree with all the accessions composed of A and B genomes under the constraint of the diploid tree topology.

See all accessions used in this study

Showing 40 of 531 accessions
Accession Name Pictures Accession number Species / Group SubSpecies / SubGroup Origin Collection Available for distribution
Agutay ITC1028 acuminata Unknown Unknown ITC
Pa (Musore) no.3 ITC0406 acuminata Unknown Thailand ITC
Pisang Cici Alas ITC0415 acuminata Unknown Indonesia ITC
Waigu ITC0465 acuminata subsp. banksii Unknown ITC
Cachaco ITC0643 ABB subgr. Bluggoe Unknown ITC
Long Tavoy ITC0093 acuminata subsp. burmannica Unknown ITC
Calcutta 4 ITC0249 acuminata subsp. burmannicoides India ITC
Pahang ITC0609 acuminata subsp. malaccensis Unknown ITC
Pisang Sipulu ITC1308 AA subgr. Pisang Jari Buaya Malaysia ITC
Mossi ITC0722 AAA subgr. Red Comoros ITC
Zebrina ITC1177 acuminata subsp. zebrina Indonesia ITC
Eda An ITC1227 AA Unknown Unknown ITC
Paka ITC1254 AA Unknown Unknown ITC
Paka ITC0320 AA Unknown Unknown ITC
Lidi ITC0395 AA Unknown Unknown ITC
Pa (Patthalong) ITC0409 AA Unknown Thailand ITC
Morong Princesa ITC0440 AA Unknown Unknown ITC
Gu Nin Chio ITC0442 AA Unknown Malaysia ITC
Pisang Madu ITC0507 AA Unknown Unknown ITC
Pisang Berlin ITC0611 AA Unknown Unknown ITC
Pisang Perecet ITC0695 AA Unknown Indonesia ITC
Pisang Angleng Hitam ITC0475 AAA Unknown Unknown ITC
Wh-o-gu ITC0078 AAA Unknown Papua New Guinea ITC
Pisang Lawadin ITC0449 AAB Unknown Malaysia ITC
Boung Fu ITC0940 AAB Unknown Papua New Guinea ITC
Pelipita ITC0472 ABB Unknown Philippines ITC
Higa ITC0464 acuminata subsp. banksii Unknown ITC
Pisang Jari Buaya ITC0312 AA subgr. Pisang Jari Buaya Malaysia ITC
Mata Kun ITC0829 AAA subgr. Red Papua New Guinea ITC
Pisang Papan ITC1061 AAA subgr. Rio Indonesia ITC
Tudlo Tumbaga ITC1231 AA Unknown Unknown ITC
Uwati ITC0373 AA Unknown Papua New Guinea ITC
Racadag ITC0434 AA Unknown Philippines ITC
Khai (Kampengpeth) ITC0532 AA Unknown Unknown ITC
Meko ITC0876 AAA Unknown Papua New Guinea ITC
Burro Cemsa ITC1259 ABB Unknown Unknown ITC
Higa ITC0378 acuminata Unknown Unknown ITC
Paracido del Rey ITC1300 AAA subgr. Cavendish Unknown ITC
Valery ITC0048 AAA subgr. Cavendish Unknown ITC
Pisang Serun 404 ITC1348 acuminata subsp. malaccensis Unknown ITC

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