DArT whole genome profiling of ITC accessions

Publication title or Reference: 

Marker type: 
DArT
Description of the dataset: 

This study was composed of 94 wild accessions and of 481 cultivated accessions. Darwin 5.0 (Perrier and Jacquemoud-Collet, 2006; Perrier et al., 2003) was used to calculate genetic distances between pairs of the 535 accessions (out of 575 of the published study). To do so, both modalities (0,1) were given equal weight using the Sokal and Michener (1958) dissimilarity index as the proportion of unmatching markers. we built a neighbor-joining (NJ) tree (Saitou and Nei, 1987) with the diploid accessions composed of A and B genomes only . With regard to the evolutionary history of cultivated bananas, we then built a second NJ tree with all the accessions composed of A and B genomes under the constraint of the diploid tree topology.

See all accessions used in this study

Showing 40 of 531 accessions
Accession Name Pictures Accession number Species / Group SubSpecies / SubGroup Origin Collection Available for distribution
Malaccensis ITC0250 acuminata subsp. malaccensis Unknown ITC
Bui Se-ed ITC0301 AAA subgr. Mutika/Lujugira Indonesia ITC
Pisang Rotan ITC0313 AA subgr. Pisang Jari Buaya Malaysia ITC
Pisang Nangka ITC1062 AAA-AAB subgr. Pisang Nangka Indonesia ITC
Lai ITC0403 AAA subgr. Red Unknown ITC
IDN107 ITC0710 ABB subgr. Saba Indonesia ITC
Kingala no.1 ITC0737 AAB subgr. Silk Unknown ITC
Kospuke ITC1011 AA Unknown Papua New Guinea ITC
Tangamor ITC1186 AA Unknown Papua New Guinea ITC
Terema ITC1214 AA Unknown Papua New Guinea ITC
Pu-te La-Bum ITC0446 AA Unknown Malaysia ITC
Posok ITC0470 AA Unknown Papua New Guinea ITC
Pisang Pipit ITC0685 AA Unknown Indonesia ITC
Lalalur ITC0771 AA Unknown Papua New Guinea ITC
Morong Princesa ITC0972 AA Unknown Unknown ITC
Mun ITC0463 AAA Unknown Papua New Guinea ITC
Ambo I ITC1038 AAB Unknown Unknown ITC
Chuoi Mat ITC1381 AAB Unknown Vietnam ITC
Hybrid ITC0382 acuminata Unknown Unknown ITC
Pa (Songkhla) ITC0408 acuminata Unknown Unknown ITC
Banksii ITC0623 acuminata subsp. banksii Papua New Guinea ITC
Paliama ITC0766 acuminata subsp. banksii Unknown ITC
Dwarf Parfitt ITC0548 AAA subgr. Cavendish Unknown ITC
Highgate ITC0263 AAA subgr. Gros Michel Unknown ITC
Naine de Nyangezi ITC0147 AAA subgr. Mutika/Lujugira Unknown ITC
Kluai Roi Wi ITC0535 AAB subgr. Pisang Kelat Unknown ITC
Veinte Cohol ITC1031 AA Unknown Unknown ITC
Apindikay ITC0985 AA Unknown Papua New Guinea ITC
Pisang Kermian ITC0437 AA Unknown Malaysia ITC
Pisang Trimulin ITC0699 AA Unknown Indonesia ITC
Muracho ITC0036 AAB Unknown Philippines ITC
Maduranga ITC0035 ABB Unknown Philippines ITC
Petite Naine ITC0654 AAA subgr. Cavendish Unknown ITC
Maiden Plantain ITC0322 AAB subgr. Plantain Unknown ITC
Cocos ITC0451 AAA subgr. Gros Michel Unknown ITC
Mbwazirume ITC1356 AAA subgr. Mutika/Lujugira Unknown ITC
Nshika ITC0145 AAA subgr. Mutika/Lujugira Unknown ITC
Mbirabire ITC0154 AAA subgr. Mutika/Lujugira Unknown ITC
Ingoromoka ITC0174 AAA subgr. Mutika/Lujugira Unknown ITC
Pisang Ceylan ITC1441 AAB subgr. Mysore Unknown ITC

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