DArT whole genome profiling of ITC accessions

Publication title or Reference: 

Marker type: 
DArT
Description of the dataset: 

This study was composed of 94 wild accessions and of 481 cultivated accessions. Darwin 5.0 (Perrier and Jacquemoud-Collet, 2006; Perrier et al., 2003) was used to calculate genetic distances between pairs of the 535 accessions (out of 575 of the published study). To do so, both modalities (0,1) were given equal weight using the Sokal and Michener (1958) dissimilarity index as the proportion of unmatching markers. we built a neighbor-joining (NJ) tree (Saitou and Nei, 1987) with the diploid accessions composed of A and B genomes only . With regard to the evolutionary history of cultivated bananas, we then built a second NJ tree with all the accessions composed of A and B genomes under the constraint of the diploid tree topology.

See all accessions used in this study

Showing 40 of 531 accessions
Accession Name Pictures Accession number Species / Group SubSpecies / SubGroup Origin Collection Available for distribution
Petite Naine ITC0654 AAA subgr. Cavendish Unknown ITC
Maiden Plantain ITC0322 AAB subgr. Plantain Unknown ITC
Cocos ITC0451 AAA subgr. Gros Michel Unknown ITC
Nshika ITC0145 AAA subgr. Mutika/Lujugira Unknown ITC
Mbirabire ITC0154 AAA subgr. Mutika/Lujugira Unknown ITC
Ingoromoka ITC0174 AAA subgr. Mutika/Lujugira Unknown ITC
Pisang Ceylan ITC1441 AAB subgr. Mysore Unknown ITC
Silk ITC0348 AAB subgr. Silk Unknown ITC
Bogia Mun ITC1001 AA Unknown Papua New Guinea ITC
To'o ITC1004 AA Unknown Papua New Guinea ITC
Binaktong ITC1181 AA Unknown Unknown ITC
Bebek ITC0471 AA Unknown Indonesia ITC
Kupulik ITC0909 AAB Unknown Papua New Guinea ITC
Kluai namwa khom ITC1304 ABB Unknown Unknown ITC
Blue Torres Strait Island ITC0338 ABB Unknown Unknown ITC
Eti Kehel ITC0271 balbisiana Unknown Unknown ITC
Balbisiana (10852) ITC0094 balbisiana Unknown Unknown ITC
Banksii ITC0341 acuminata subsp. banksii Unknown ITC
Naine de Chine ITC0178 AAA subgr. Cavendish Unknown ITC
Kluai Hom Khom ITC0527 AAA subgr. Cavendish Unknown ITC
Curare ITC1165 AAB subgr. Plantain Unknown ITC
Malaccensis ITC0399 acuminata subsp. malaccensis Unknown ITC
Nakitengwa ITC1180 AAA subgr. Mutika/Lujugira Unknown ITC
Nante ITC1353 AAA subgr. Mutika/Lujugira Unknown ITC
Makara ITC0177 AAA subgr. Mutika/Lujugira Unknown ITC
Guineo ITC0005 AAA subgr. Mutika/Lujugira Unknown ITC
Pisang Rajah ITC0243 AAB subgr. Nendra Padaththi Unknown ITC
Morong Princesa ITC0310 AA subgr. Pisang Jari Buaya Philippines ITC
Pisang Nangka ITC0004 AAA-AAB subgr. Pisang Nangka Malaysia ITC
Prata ana ITC0962 AAB subgr. Pome Unknown ITC
Leite ITC0277 AAA subgr. Rio Unknown ITC
Pisang Mas Ayer ITC0435 AA subgr. Sucrier Malaysia ITC
Pisang Cici ITC0681 acuminata Unknown Indonesia ITC
Tavoy ITC0072 acuminata subsp. burmannica Unknown ITC
Lacatan ITC0768 AAA subgr. Cavendish Unknown ITC
Pongani ITC1019 AA Unknown Papua New Guinea ITC
Tomolo ITC1187 AA Unknown Papua New Guinea ITC
Saing-Hil ITC0439 AA Unknown Philippines ITC
Amas (South Johnstone) ITC0567 AA Unknown Unknown ITC
Sabra ITC0026 ABB Unknown Gabon ITC

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